|
| Status |
Public on Jul 30, 2011 |
| Title |
LICR_ChipSeq_Spleen_H3K4me1_adult-8wks |
| Sample type |
SRA |
| |
|
| Source name |
Spleen
|
| Organism |
Mus musculus |
| Characteristics |
lab: LICR-m
lab description: Ren - Ludwig Institue for Cancer Research
datatype: ChipSeq
datatype description: ChIP-Seq
biomaterial_type: tissue
donor_id: ENCDO956IXV
cell organism: mouse
tissue_type: Spleen
Sex: M
antibody: H3K4me1
antibody antibodydescription: rabbit polyclonal
antibody targetdescription: Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.
antibody vendorname: Abcam
antibody vendorid: ab8895
age: adult-8wks
age description: Adult 8 weeks
control: std
control description: Standard input signal for most experiments.
controlid: Spleen/Input/std
labversion: 09/19/10 Lane 8C
replicate: 1
replicate description: tier 1
softwareversion: Bowtie
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
|
| Biomaterial provider |
LICR lab
|
| Growth protocol |
Spleen_Ren_protocol.pdf
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeLicrHistone
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeLicrHistone
|
| |
|
| Submission date |
Jul 29, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL13112 |
| Series (2) |
| GSE31039 |
Histone Modifications by ChIP-seq from ENCODE/LICR |
| GSE49847 |
A comparative encyclopedia of DNA elements in the mouse genome |
|
| Relations |
| SRA |
SRX085454 |
| BioSample |
SAMN00690346 |
| Named Annotation |
GSM769031_wgEncodeLicrHistoneSpleenH3k4me1MAdult8wksC57bl6StdSig.bigWig |
