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Sample GSM769119 Query DataSets for GSM769119
Status Public on Mar 22, 2012
Title 8DD, Liposarcoma (Slide 35)
Sample type RNA
 
Channel 1
Source name Liposarcoma
Organism Homo sapiens
Characteristics tissue: Liposarcoma
Extracted molecule total RNA
Extraction protocol Total RNA extracted using Trizol following manufacturer's instructions.
Label Hy3
Label protocol The samples are labeled using the miRCURY Hy3/Hy5Power labeling kit
 
Channel 2
Source name common reference
Organism Homo sapiens
Characteristics sample type: common reference
Extracted molecule total RNA
Extraction protocol Total RNA extracted using Trizol following manufacturer's instructions.
Label Hy5
Label protocol The samples are labeled using the miRCURY Hy3/Hy5Power labeling kit
 
 
Hybridization protocol The samples are hybridized on the miRCURY LNA Array (v.11.0)
Scan protocol Scanned on an Axon GenePix 4000B. Images were quantified using GenePix pro V6.0.
Description 8DD, Liposarcoma (Slide 35)
Data processing Within-slide normalisation of Hy3/Hy5 ratios (log2 transformed) by background subtraction and with a global Lowess (LOcally WEighted Scatterplot Smoothing) regression algorithm.
 
Submission date Jul 29, 2011
Last update date Mar 22, 2012
Contact name Chad Creighton
E-mail(s) creighto@bcm.tmc.edu
Organization name Baylor College of Medicine
Department Biostatistics, Ducan Cancer Center
Street address One Baylor Plaza, Mail Stop: BCM305
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platform ID GPL7723
Series (1)
GSE31045 MicroRNAs differentially expressed in liposarcoma

Data table header descriptions
ID_REF
VALUE normalized median of ratios Hy3/Hy5 (a median ratio of replicated spots with flags 0, log2 transformed)

Data table
ID_REF VALUE
17748 -1.717526759
17888 -0.180665904
42530 -0.028744077
17749 1.19577868
42769 0.545775873
19004 0.408740636
42653
46437 -2.073047362
42505 0.305760041
46436 -0.899912703
42743 0.60089532
46435 -1.976445455
42768
42742
46438 -1.721386327
42778
9938 -0.303474603
42534
10916 -6.641266824
19581 -1.368036207

Total number of rows: 1923

Table truncated, full table size 23 Kbytes.




Supplementary file Size Download File type/resource
GSM769119_Hy3_Exiqon_14035399_S01_Cropped.txt.gz 887.5 Kb (ftp)(http) TXT
GSM769119_Hy5_Exiqon_14035399_S01_Cropped.txt.gz 833.2 Kb (ftp)(http) TXT
Processed data included within Sample table

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