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Sample GSM76968 Query DataSets for GSM76968
Status Public on May 01, 2006
Title mouselung_scid_control_rep03
Sample type RNA
 
Source name whole lung
Organism Mus musculus
Characteristics strain:BALB/c SCID, gender:male, age:8wks, tissue: whole lung, condition: uninfected control
Extracted molecule total RNA
Extraction protocol trizol extraction followed by qiagen RNeasy total RNA cleanup protocol
Label biotin
Label protocol standard Affymetrix procedures
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures using affy GCS3000
Description Intensity of hybridization for each probe pair was computed by GCOS 1.2 software (Affymetrix). (For more detailed methods, please refer to the website of the Malaria Research Institute Gene Array Core Facility (MRI-GACF) at the Johns Hopkins Bloomberg School of Public Health http://jhmmi.jhsph.edu)
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Oct 04, 2005
Last update date Aug 28, 2018
Contact name Joshua J Reece
E-mail(s) josh.reece@gmail.com
Organization name Johns Hopkins University BSPH
Department MMI
Lab Lab of Alan Scott
Street address 615 N. Wolfe Street
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL1261
Series (1)
GSE3414 Immune Response to Nippostrongylus brasiliensis in the mouse lung
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 495.3 P
AFFX-BioB-M_at 1025.6 P
AFFX-BioB-3_at 598.8 P
AFFX-BioC-5_at 1804.9 P
AFFX-BioC-3_at 1595 P
AFFX-BioDn-5_at 2272.4 P
AFFX-BioDn-3_at 8942.4 P
AFFX-CreX-5_at 30322 P
AFFX-CreX-3_at 31284.7 P
AFFX-DapX-5_at 49.8 A
AFFX-DapX-M_at 24.3 A
AFFX-DapX-3_at 12.9 A
AFFX-LysX-5_at 23.9 A
AFFX-LysX-M_at 45.1 A
AFFX-LysX-3_at 20.8 A
AFFX-PheX-5_at 2.7 A
AFFX-PheX-M_at 2 A
AFFX-PheX-3_at 33.8 A
AFFX-ThrX-5_at 5.7 A
AFFX-ThrX-M_at 5 A

Total number of rows: 45101

Table truncated, full table size 833 Kbytes.




Supplementary file Size Download File type/resource
GSM76968.CEL.gz 6.1 Mb (ftp)(http) CEL

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