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Status
Public on May 01, 2006
Title
mouselung_scid_3DPI_rep02
Sample type
RNA
Source name
whole lung
Organism
Mus musculus Characteristics
strain:BALB/c scid, gender:male, age:8wks, tissue: whole lung, condition: 3DPI
Extracted molecule
total RNA
Extraction protocol
trizol extraction followed by qiagen RNeasy total RNA cleanup protocol
Label
biotin
Label protocol
standard Affymetrix procedures
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures using affy GCS3000
Description
Intensity of hybridization for each probe pair was computed by GCOS 1.2 software (Affymetrix). (For more detailed methods, please refer to the website of the Malaria Research Institute Gene Array Core Facility (MRI-GACF) at the Johns Hopkins Bloomberg School of Public Health http://jhmmi.jhsph.edu )
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Oct 04, 2005
Last update date
Aug 28, 2018
Contact name
Joshua J Reece
E-mail(s)
josh.reece@gmail.com Organization name
Johns Hopkins University BSPH
Department
MMI
Lab
Lab of Alan Scott
Street address
615 N. Wolfe Street
City
Baltimore
State/province
MD
ZIP/Postal code
21205
Country
USA
Platform ID
GPL1261 Series (1)
GSE3414 Immune Response to Nippostrongylus brasiliensis in the mouse lung
Relations Reanalyzed by
GSE119085
Data table header descriptions ID_REF VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
Data table ID_REF VALUE ABS_CALL AFFX-BioB-5_at
426.8
P
AFFX-BioB-M_at
1138
P
AFFX-BioB-3_at
490.9
P
AFFX-BioC-5_at
1506.6
P
AFFX-BioC-3_at
1510.4
P
AFFX-BioDn-5_at
1833.1
P
AFFX-BioDn-3_at
7737.4
P
AFFX-CreX-5_at
27523.7
P
AFFX-CreX-3_at
27307.1
P
AFFX-DapX-5_at
36.8
A
AFFX-DapX-M_at
63.3
A
AFFX-DapX-3_at
28.6
A
AFFX-LysX-5_at
22.7
A
AFFX-LysX-M_at
40.7
A
AFFX-LysX-3_at
18.8
A
AFFX-PheX-5_at
19
A
AFFX-PheX-M_at
3.8
A
AFFX-PheX-3_at
90.9
A
AFFX-ThrX-5_at
17.4
A
AFFX-ThrX-M_at
6.7
A
45101 834 Kbytes .Supplementary file Size Download File type/resource GSM76979.CEL.gz
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