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Sample GSM76981

Query DataSets for GSM76981

Status

Public on May 01, 2006

Title

mouselung_wt_4DPI_rep01

Sample type

RNA

Source name

whole lung

Organism

Mus musculus

Characteristics

strain:BALB/c WT, gender:male, age:8wks, tissue: whole lung, condition: 4DPI

Extracted molecule

total RNA

Extraction protocol

trizol extraction followed by qiagen RNeasy total RNA cleanup protocol

Label

biotin

Label protocol

standard Affymetrix procedures

Hybridization protocol

standard Affymetrix procedures

Scan protocol

standard Affymetrix procedures using affy GCS3000

Description

Intensity of hybridization for each probe pair was computed by GCOS 1.2 software (Affymetrix). (For more detailed methods, please refer to the website of the Malaria Research Institute Gene Array Core Facility (MRI-GACF) at the Johns Hopkins Bloomberg School of Public Health http://jhmmi.jhsph.edu)

Data processing

Affymetrix Microarray Suite version 5.0

Submission date

Oct 04, 2005

Last update date

Aug 28, 2018

Contact name

Joshua J Reece

E-mail(s)

josh.reece@gmail.com

Organization name

Johns Hopkins University BSPH

Department

MMI

Lab

Lab of Alan Scott

Street address

615 N. Wolfe Street

City

Baltimore

State/province

ZIP/Postal code

21205

Country

USA

Platform ID

GPL1261

Series (1)

GSE3414

Immune Response to Nippostrongylus brasiliensis in the mouse lung

Relations

Reanalyzed by

GSE119085

Data table header descriptions
ID_REF
VALUE	MAS5-calculated Signal intensity
ABS_CALL	the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF	VALUE	ABS_CALL
AFFX-BioB-5_at	619.9	P
AFFX-BioB-M_at	1169.6	P
AFFX-BioB-3_at	688.7	P
AFFX-BioC-5_at	1804	P
AFFX-BioC-3_at	1480	P
AFFX-BioDn-5_at	2481.1	P
AFFX-BioDn-3_at	9359.6	P
AFFX-CreX-5_at	29493	P
AFFX-CreX-3_at	37276.8	P
AFFX-DapX-5_at	30.2	P
AFFX-DapX-M_at	12	A
AFFX-DapX-3_at	4.4	A
AFFX-LysX-5_at	19.3	A
AFFX-LysX-M_at	57.2	A
AFFX-LysX-3_at	3.4	A
AFFX-PheX-5_at	2.8	A
AFFX-PheX-M_at	4.4	A
AFFX-PheX-3_at	13.9	A
AFFX-ThrX-5_at	7.4	A
AFFX-ThrX-M_at	2	A

Total number of rows: 45101

Table truncated, full table size 832 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM76981.CEL.gz	5.8 Mb	(ftp)(http)	CEL