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Sample GSM76985 Query DataSets for GSM76985
Status Public on May 01, 2006
Title mouselung_scid_4DPI_rep02
Sample type RNA
 
Source name whole lung
Organism Mus musculus
Characteristics strain:BALB/c scid, gender:male, age:8wks, tissue: whole lung, condition: 4DPI
Extracted molecule total RNA
Extraction protocol trizol extraction followed by qiagen RNeasy total RNA cleanup protocol
Label biotin
Label protocol standard Affymetrix procedures
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures using affy GCS3000
Description Intensity of hybridization for each probe pair was computed by GCOS 1.2 software (Affymetrix). (For more detailed methods, please refer to the website of the Malaria Research Institute Gene Array Core Facility (MRI-GACF) at the Johns Hopkins Bloomberg School of Public Health http://jhmmi.jhsph.edu)
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Oct 04, 2005
Last update date Aug 28, 2018
Contact name Joshua J Reece
E-mail(s) josh.reece@gmail.com
Organization name Johns Hopkins University BSPH
Department MMI
Lab Lab of Alan Scott
Street address 615 N. Wolfe Street
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL1261
Series (1)
GSE3414 Immune Response to Nippostrongylus brasiliensis in the mouse lung
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 377 P
AFFX-BioB-M_at 1044.9 P
AFFX-BioB-3_at 476.6 P
AFFX-BioC-5_at 1706.6 P
AFFX-BioC-3_at 1477.7 P
AFFX-BioDn-5_at 1952.1 P
AFFX-BioDn-3_at 9392.9 P
AFFX-CreX-5_at 32735.5 P
AFFX-CreX-3_at 36227.6 P
AFFX-DapX-5_at 2.6 A
AFFX-DapX-M_at 52.6 A
AFFX-DapX-3_at 26 A
AFFX-LysX-5_at 2.3 A
AFFX-LysX-M_at 10.7 A
AFFX-LysX-3_at 14.5 A
AFFX-PheX-5_at 2.2 A
AFFX-PheX-M_at 2.8 A
AFFX-PheX-3_at 41.5 A
AFFX-ThrX-5_at 8.5 A
AFFX-ThrX-M_at 4.9 A

Total number of rows: 45101

Table truncated, full table size 832 Kbytes.




Supplementary file Size Download File type/resource
GSM76985.CEL.gz 5.8 Mb (ftp)(http) CEL

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