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Sample GSM769940 Query DataSets for GSM769940
Status Public on Aug 02, 2011
Title PcDNA3.1-1
Sample type RNA
 
Source name wild-type
Organism Mus musculus
Characteristics cell type: STHdh striatal cells
genotype/variation: wild-type
Extracted molecule total RNA
Extraction protocol RNA from striatal cells was extracted using RNAeasy mini kit (Qiagen) with DNase I treatment to eliminate genomic DNA contamination
Label biotin
Label protocol Biotin-labeled
 
Hybridization protocol Samples were hybridized onto the Illumina Sentrix BeadChip Array MouseRef-8 v2 for 18 hours at 58°C (protocol available at http://www.illumina.com/products/mouseref-8_expression_beadchip_kits_v2.ilmn).
Scan protocol BeadChip Arrays were scanned using the Illumina BeadArray Reader with default settings.
Description replicate 1
Data processing Data normalization was performed using GenomeStudio Gene Expression Module v1.0 with quantile normalization.
 
Submission date Aug 01, 2011
Last update date Aug 02, 2011
Contact name Elizabeth A. Thomas
Organization name The Scripps Research Institute
Department Molecular Biology
Street address 10550 N. Torrey Pines Rd
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL6885
Series (1)
GSE31096 Genome-wide identification of Bcl11b gene targets

Data table header descriptions
ID_REF
VALUE quantile normalized signal

Data table
ID_REF VALUE
ILMN_1212607 6.41765795
ILMN_1212612 4.79263987
ILMN_1212619 7.29245232
ILMN_1212628 4.42589296
ILMN_1212632 5.73887617
ILMN_1212636 13.4999318
ILMN_1212637 11.1347683
ILMN_1212645 3.98376524
ILMN_1212648 9.370629
ILMN_1212653 9.13850604
ILMN_1212672 9.62828641
ILMN_1212682 6.87868439
ILMN_1212683 5.01525076
ILMN_1212685 4.51381412
ILMN_1212692 7.17717932
ILMN_1212693 8.14566727
ILMN_1212695 5.61849246
ILMN_1212698 3.83093574
ILMN_1212702 4.81480623
ILMN_1212703 7.69382564

Total number of rows: 25697

Table truncated, full table size 599 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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