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Sample GSM769941 Query DataSets for GSM769941
Status Public on Aug 02, 2011
Title PcDNA3.1-2
Sample type RNA
Source name wild-type
Organism Mus musculus
Characteristics cell type: STHdh striatal cells
genotype/variation: wild-type
Extracted molecule total RNA
Extraction protocol RNA from striatal cells was extracted using RNAeasy mini kit (Qiagen) with DNase I treatment to eliminate genomic DNA contamination
Label biotin
Label protocol Biotin-labeled
Hybridization protocol Samples were hybridized onto the Illumina Sentrix BeadChip Array MouseRef-8 v2 for 18 hours at 58°C (protocol available at
Scan protocol BeadChip Arrays were scanned using the Illumina BeadArray Reader with default settings.
Description replicate 2
Data processing Data normalization was performed using GenomeStudio Gene Expression Module v1.0 with quantile normalization.
Submission date Aug 01, 2011
Last update date Aug 02, 2011
Contact name Elizabeth A. Thomas
Organization name The Scripps Research Institute
Department Molecular Biology
Street address 10550 N. Torrey Pines Rd
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
Platform ID GPL6885
Series (1)
GSE31096 Genome-wide identification of Bcl11b gene targets

Data table header descriptions
VALUE quantile normalized signal

Data table
ILMN_1212607 5.84200053
ILMN_1212612 5.94739943
ILMN_1212619 6.91677913
ILMN_1212628 5.22428007
ILMN_1212632 6.73364841
ILMN_1212636 13.6119031
ILMN_1212637 11.4334227
ILMN_1212645 4.49780012
ILMN_1212648 9.35686282
ILMN_1212653 8.60789692
ILMN_1212672 9.47723532
ILMN_1212682 6.50749307
ILMN_1212683 4.13974615
ILMN_1212685 4.0061454
ILMN_1212692 7.17188734
ILMN_1212693 7.82916331
ILMN_1212695 4.90952015
ILMN_1212698 3.83326355
ILMN_1212702 4.4446081
ILMN_1212703 7.68553864

Total number of rows: 25697

Table truncated, full table size 599 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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