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Sample GSM769942 Query DataSets for GSM769942
Status Public on Aug 02, 2011
Title PcDNA3.1-3
Sample type RNA
 
Source name wild-type
Organism Mus musculus
Characteristics cell type: STHdh striatal cells
genotype/variation: wild-type
Extracted molecule total RNA
Extraction protocol RNA from striatal cells was extracted using RNAeasy mini kit (Qiagen) with DNase I treatment to eliminate genomic DNA contamination
Label biotin
Label protocol Biotin-labeled
 
Hybridization protocol Samples were hybridized onto the Illumina Sentrix BeadChip Array MouseRef-8 v2 for 18 hours at 58°C (protocol available at http://www.illumina.com/products/mouseref-8_expression_beadchip_kits_v2.ilmn).
Scan protocol BeadChip Arrays were scanned using the Illumina BeadArray Reader with default settings.
Description replicate 3
Data processing Data normalization was performed using GenomeStudio Gene Expression Module v1.0 with quantile normalization.
 
Submission date Aug 01, 2011
Last update date Aug 02, 2011
Contact name Elizabeth A. Thomas
Organization name The Scripps Research Institute
Department Molecular Biology
Street address 10550 N. Torrey Pines Rd
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL6885
Series (1)
GSE31096 Genome-wide identification of Bcl11b gene targets

Data table header descriptions
ID_REF
VALUE quantile normalized signal

Data table
ID_REF VALUE
ILMN_1212607 5.8977431
ILMN_1212612 5.63694279
ILMN_1212619 7.47249346
ILMN_1212628 5.3601564
ILMN_1212632 6.40492968
ILMN_1212636 13.1414836
ILMN_1212637 11.2942789
ILMN_1212645 3.86195834
ILMN_1212648 9.828653
ILMN_1212653 9.42733967
ILMN_1212672 9.85893336
ILMN_1212682 6.71551879
ILMN_1212683 4.52383165
ILMN_1212685 4.98160788
ILMN_1212692 7.11093425
ILMN_1212693 8.2967795
ILMN_1212695 4.79598041
ILMN_1212698 4.51839288
ILMN_1212702 4.43905792
ILMN_1212703 7.32388342

Total number of rows: 25697

Table truncated, full table size 599 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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