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Sample GSM769944 Query DataSets for GSM769944
Status Public on Aug 02, 2011
Title Bcl11b-1
Sample type RNA
 
Source name Bcl11b-transfected
Organism Mus musculus
Characteristics cell type: STHdh striatal cells
genotype/variation: Bcl11b-transfected
Extracted molecule total RNA
Extraction protocol RNA from striatal cells was extracted using RNAeasy mini kit (Qiagen) with DNase I treatment to eliminate genomic DNA contamination
Label biotin
Label protocol Biotin-labeled
 
Hybridization protocol Samples were hybridized onto the Illumina Sentrix BeadChip Array MouseRef-8 v2 for 18 hours at 58°C (protocol available at http://www.illumina.com/products/mouseref-8_expression_beadchip_kits_v2.ilmn).
Scan protocol BeadChip Arrays were scanned using the Illumina BeadArray Reader with default settings.
Description replicate 1
Data processing Data normalization was performed using GenomeStudio Gene Expression Module v1.0 with quantile normalization.
 
Submission date Aug 01, 2011
Last update date Aug 02, 2011
Contact name Elizabeth A. Thomas
Organization name The Scripps Research Institute
Department Molecular Biology
Street address 10550 N. Torrey Pines Rd
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL6885
Series (1)
GSE31096 Genome-wide identification of Bcl11b gene targets

Data table header descriptions
ID_REF
VALUE quantile normalized signal

Data table
ID_REF VALUE
ILMN_1212607 6.3385542
ILMN_1212612 5.98251244
ILMN_1212619 6.74614048
ILMN_1212628 5.32777949
ILMN_1212632 6.19293288
ILMN_1212636 13.2557724
ILMN_1212637 10.9317436
ILMN_1212645 3.8482143
ILMN_1212648 9.62271754
ILMN_1212653 8.57650891
ILMN_1212672 9.77272085
ILMN_1212682 6.69193694
ILMN_1212683 4.57944266
ILMN_1212685 4.66675091
ILMN_1212692 7.66203313
ILMN_1212693 7.59069109
ILMN_1212695 5.01197981
ILMN_1212698 3.31594729
ILMN_1212702 4.94851455
ILMN_1212703 7.85971554

Total number of rows: 25697

Table truncated, full table size 599 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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