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Sample GSM769946 Query DataSets for GSM769946
Status Public on Aug 02, 2011
Title Bcl11b-3
Sample type RNA
 
Source name Bcl11b-transfected
Organism Mus musculus
Characteristics cell type: STHdh striatal cells
genotype/variation: Bcl11b-transfected
Extracted molecule total RNA
Extraction protocol RNA from striatal cells was extracted using RNAeasy mini kit (Qiagen) with DNase I treatment to eliminate genomic DNA contamination
Label biotin
Label protocol Biotin-labeled
 
Hybridization protocol Samples were hybridized onto the Illumina Sentrix BeadChip Array MouseRef-8 v2 for 18 hours at 58°C (protocol available at http://www.illumina.com/products/mouseref-8_expression_beadchip_kits_v2.ilmn).
Scan protocol BeadChip Arrays were scanned using the Illumina BeadArray Reader with default settings.
Description replicate 3
Data processing Data normalization was performed using GenomeStudio Gene Expression Module v1.0 with quantile normalization.
 
Submission date Aug 01, 2011
Last update date Aug 02, 2011
Contact name Elizabeth A. Thomas
Organization name The Scripps Research Institute
Department Molecular Biology
Street address 10550 N. Torrey Pines Rd
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL6885
Series (1)
GSE31096 Genome-wide identification of Bcl11b gene targets

Data table header descriptions
ID_REF
VALUE quantile normalized signal

Data table
ID_REF VALUE
ILMN_1212607 6.04046179
ILMN_1212612 5.63982796
ILMN_1212619 7.06072349
ILMN_1212628 4.77881045
ILMN_1212632 6.34076573
ILMN_1212636 13.4914736
ILMN_1212637 10.7514938
ILMN_1212645 3.61465096
ILMN_1212648 9.25218785
ILMN_1212653 8.23758284
ILMN_1212672 9.50542791
ILMN_1212682 6.71623438
ILMN_1212683 4.32806236
ILMN_1212685 3.99675028
ILMN_1212692 7.17614023
ILMN_1212693 7.87255423
ILMN_1212695 5.21723859
ILMN_1212698 3.6944267
ILMN_1212702 4.48094817
ILMN_1212703 8.28394862

Total number of rows: 25697

Table truncated, full table size 599 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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