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GEO accession:
Sample GSM77216
Query DataSets for GSM77216
Status
Public on Nov 02, 2005
Title
antagomir122
Sample type
RNA
Source name
liver
Organism
Mus musculus
Characteristics
C57Bl6
Extracted molecule
total RNA
Extraction protocol
total RNA from 3 livers were combined
Label
biotin
Label protocol
Approximately 10 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
mice were treated with 3x 80mg/KG bodyweight/day antagomir122
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Oct 07, 2005
Last update date
Aug 28, 2018
Contact name
Markus Stoffel
E-mail(s)
stoffel@rockefeller.edu
Phone
212-327-8797
Fax
212-327-7997
Organization name
Rockefeller University
Department
Laboratory of Metabolic Diseases
Street address
1230 York Avenue
City
New York
State/province
NY
ZIP/Postal code
10021
Country
USA
Platform ID
GPL1261
Series (1)
GSE3425
Silencing of microRNAs in vivo with "antagomirs"
Relations
Reanalyzed by
GSE119085
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
376.9
P
0.00141
AFFX-BioB-M_at
555.4
P
0.002023
AFFX-BioB-3_at
278.4
P
0.001248
AFFX-BioC-5_at
1114.1
P
0.000081
AFFX-BioC-3_at
1258.8
P
0.000044
AFFX-BioDn-5_at
1823.4
P
0.000052
AFFX-BioDn-3_at
5419.9
P
0.000169
AFFX-CreX-5_at
12970.6
P
0.000052
AFFX-CreX-3_at
15593.8
P
0.000044
AFFX-DapX-5_at
23.8
A
0.340661
AFFX-DapX-M_at
46.6
A
0.275146
AFFX-DapX-3_at
10.3
A
0.783476
AFFX-LysX-5_at
29.5
A
0.250796
AFFX-LysX-M_at
44.2
A
0.617401
AFFX-LysX-3_at
7.5
A
0.455413
AFFX-PheX-5_at
7.9
A
0.724854
AFFX-PheX-M_at
5.7
A
0.834139
AFFX-PheX-3_at
17.9
A
0.699394
AFFX-ThrX-5_at
13.6
A
0.645547
AFFX-ThrX-M_at
42.2
A
0.195266
Total number of rows:
45101
Table truncated, full table size
1222 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM77216.CEL.gz
6.5 Mb
(ftp)
(http)
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