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Sample GSM7764 Query DataSets for GSM7764
Status Public on Dec 05, 2003
Title Cardiac fibroblast
Sample type SAGE
Anchor NlaIII
Tag Count 110169
Tag Length 10
 
Source name cardiac fibroblasts isolated from adult mouse heart
Organism Mus musculus
Extracted molecule polyA RNA
Extraction protocol TRIzol reagent (Invitrogen) followed by oligo(dT) cellulose (Ambion)
 
Description Cardiac fibroblasts were isolated from 3-month old C57BL/6 mice.
RNA was prepared from quiescent, serum-starved cardiac fibroblasts in passage 15.
A total number of 118654 tags was sequenced. After removal of duplicate ditags and linker-derived sequences 110169 tags remained.
Keywords = cardiac
Keywords = fibroblast
Keywords = mouse
Keywords = heart
 
Submission date Jul 08, 2003
Last update date Nov 19, 2008
Contact name Albert Peter Smolenski
E-mail(s) albert.smolenski@ucd.ie
Phone +353-1-7166746
Organization name University College Dublin
Department Conway Institute
Street address Belfield
City Dublin
ZIP/Postal code 4
Country Ireland
 
Platform ID GPL11
Series (1)
GSE25757 SAGE analysis of cardiac fibroblasts isolated from adult mouse heart

Data table header descriptions
TAG SAGE tag sequence
COUNT SAGE tag count
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 211 1915.24
AAAAAAAAAG 2 18.15
AAAAAAAAAT 6 54.46
AAAAAAAAGA 1 9.08
AAAAAAAATA 2 18.15
AAAAAAACAA 1 9.08
AAAAAAACAT 1 9.08
AAAAAAACTA 3 27.23
AAAAAAATAA 2 18.15
AAAAAAATAG 2 18.15
AAAAAAATCA 1 9.08
AAAAAACCAG 1 9.08
AAAAAAGAAA 5 45.38
AAAAAAGGAG 1 9.08
AAAAAAGGGC 1 9.08
AAAAAAGTCT 1 9.08
AAAAAATAAA 8 72.62
AAAAAATGTC 1 9.08
AAAAAATTGA 2 18.15
AAAAACAAGA 1 9.08

Total number of rows: 30507

Table truncated, full table size 548 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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