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Sample GSM77808 Query DataSets for GSM77808
Status Public on Jan 13, 2006
Title SNU-354 vs. Universal control 2
Sample type RNA
 
Channel 1
Source name SNU-354
Organism Homo sapiens
Characteristics Hepatoma cell line
Extracted molecule total RNA
Extraction protocol RNeasy midi-prep (Qiagen, Chatsworth, CA)
Label Cy5
Label protocol Genisphere 3DNA Expression Array Detection Kit (Genisphere, Hatfield, PA)
 
Channel 2
Source name Universal control
Organism Homo sapiens
Characteristics Pooled total RNA from 9 cancer cells (SNU-16, Raji, CaSki, Y-79, MCF7, A431, HCT116, Ovk-4 and Jurkat)
Extracted molecule total RNA
Extraction protocol RNeasy midi-prep (Qiagen, Chatsworth, CA)
Label Cy3
Label protocol Genisphere 3DNA Expression Array Detection Kit (Genisphere, Hatfield, PA)
 
 
Hybridization protocol Genisphere 3DNA Expression Array Detection Kit (Genisphere, Hatfield, PA)
Scan protocol Scannarray 5000 (Packard, Billerica, MA)
Description Pro v4.0 (Axon Instruments, Whipple Road Union City, CA)
Data processing braju.com, BRB-ArrayTools
 
Submission date Oct 12, 2005
Last update date Oct 13, 2005
Contact name Heun-Sik Lee
E-mail(s) hslee00@kribb.re.kr
Phone 82-42-879-8121
Fax 82-42-879-8119
Organization name Korea Reaearch Institute of Bioscience and Biotechnology
Lab Human genomics
Street address 52 Eoeun-dong, Yuseong-gu
City Daejeon
ZIP/Postal code 305-333
Country South Korea
 
Platform ID GPL2911
Series (1)
GSE3444 Hepatoma cell lines vs. Universal control

Data table header descriptions
ID_REF
VALUE log2 of channel1/channel2 ratio

Data table
ID_REF VALUE
1
2 -0.379523213
3 0.417597235
4 -0.922662679
5
6 0.654208276
7 -0.162775121
8 0.63159683
9 0.056901398
10
11 0.335411597
12
13
14 0.229559187
15
16 0.735841933
17
18
19 0.838848866
20 0.670888245

Total number of rows: 10336

Table truncated, full table size 139 Kbytes.




Supplementary data files not provided

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