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Status |
Public on Jan 13, 2006 |
Title |
SNU-449 vs. Universal control 2 |
Sample type |
RNA |
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Channel 1 |
Source name |
SNU-449
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Organism |
Homo sapiens |
Characteristics |
Hepatoma cell line
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Extracted molecule |
total RNA |
Extraction protocol |
RNeasy midi-prep (Qiagen, Chatsworth, CA)
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Label |
Cy5
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Label protocol |
Genisphere 3DNA Expression Array Detection Kit (Genisphere, Hatfield, PA)
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Channel 2 |
Source name |
Universal control
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Organism |
Homo sapiens |
Characteristics |
Pooled total RNA from 9 cancer cells (SNU-16, Raji, CaSki, Y-79, MCF7, A431, HCT116, Ovk-4 and Jurkat)
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Extracted molecule |
total RNA |
Extraction protocol |
RNeasy midi-prep (Qiagen, Chatsworth, CA)
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Label |
Cy3
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Label protocol |
Genisphere 3DNA Expression Array Detection Kit (Genisphere, Hatfield, PA)
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Hybridization protocol |
Genisphere 3DNA Expression Array Detection Kit (Genisphere, Hatfield, PA)
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Scan protocol |
Scannarray 5000 (Packard, Billerica, MA)
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Description |
Pro v4.0 (Axon Instruments, Whipple Road Union City, CA)
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Data processing |
braju.com, BRB-ArrayTools
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Submission date |
Oct 12, 2005 |
Last update date |
Oct 13, 2005 |
Contact name |
Heun-Sik Lee |
E-mail(s) |
hslee00@kribb.re.kr
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Phone |
82-42-879-8121
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Fax |
82-42-879-8119
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Organization name |
Korea Reaearch Institute of Bioscience and Biotechnology
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Lab |
Human genomics
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Street address |
52 Eoeun-dong, Yuseong-gu
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City |
Daejeon |
ZIP/Postal code |
305-333 |
Country |
South Korea |
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Platform ID |
GPL2911 |
Series (1) |
GSE3444 |
Hepatoma cell lines vs. Universal control |
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Data table header descriptions |
ID_REF |
|
VALUE |
log2 of channel1/channel2 ratio |
Data table |
ID_REF |
VALUE |
1 |
|
2 |
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3 |
0.493654709 |
4 |
0.238878353 |
5 |
|
6 |
0.036297846 |
7 |
1.119480925 |
8 |
0.392706132 |
9 |
0.130972967 |
10 |
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11 |
-0.267991297 |
12 |
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13 |
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14 |
-0.170337731 |
15 |
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16 |
0.486276033 |
17 |
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18 |
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19 |
0.256922721 |
20 |
0.349196901 |
Total number of rows: 10336
Table truncated, full table size 129 Kbytes.
Supplementary data files not provided |
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