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Sample GSM77816 Query DataSets for GSM77816
Status Public on Jan 13, 2006
Title SNU-475 vs. Universal control 2
Sample type RNA
 
Channel 1
Source name SNU-475
Organism Homo sapiens
Characteristics Hepatoma cell line
Extracted molecule total RNA
Extraction protocol RNeasy midi-prep (Qiagen, Chatsworth, CA)
Label Cy5
Label protocol Genisphere 3DNA Expression Array Detection Kit (Genisphere, Hatfield, PA)
 
Channel 2
Source name Universal control
Organism Homo sapiens
Characteristics Pooled total RNA from 9 cancer cells (SNU-16, Raji, CaSki, Y-79, MCF7, A431, HCT116, Ovk-4 and Jurkat)
Extracted molecule total RNA
Extraction protocol RNeasy midi-prep (Qiagen, Chatsworth, CA)
Label Cy3
Label protocol Genisphere 3DNA Expression Array Detection Kit (Genisphere, Hatfield, PA)
 
 
Hybridization protocol Genisphere 3DNA Expression Array Detection Kit (Genisphere, Hatfield, PA)
Scan protocol Scannarray 5000 (Packard, Billerica, MA)
Description Pro v4.0 (Axon Instruments, Whipple Road Union City, CA)
Data processing braju.com, BRB-ArrayTools
 
Submission date Oct 13, 2005
Last update date Oct 13, 2005
Contact name Heun-Sik Lee
E-mail(s) hslee00@kribb.re.kr
Phone 82-42-879-8121
Fax 82-42-879-8119
Organization name Korea Reaearch Institute of Bioscience and Biotechnology
Lab Human genomics
Street address 52 Eoeun-dong, Yuseong-gu
City Daejeon
ZIP/Postal code 305-333
Country South Korea
 
Platform ID GPL2911
Series (1)
GSE3444 Hepatoma cell lines vs. Universal control

Data table header descriptions
ID_REF
VALUE log2 of channel1/channel2 ratio

Data table
ID_REF VALUE
1
2 -0.328571369
3 0.27045908
4 -0.067444204
5
6 0.186741213
7 0.970095888
8 0.022787365
9 -0.582109068
10
11 -0.257641749
12
13
14 -1.132412575
15
16 0.759975572
17
18
19 -0.483089217
20 -0.128952633

Total number of rows: 10336

Table truncated, full table size 141 Kbytes.




Supplementary data files not provided

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