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Sample GSM779403 Query DataSets for GSM779403
Status Public on May 03, 2012
Title B6ISM1 rep2
Sample type RNA
 
Source name B6ISM1 rep2
Organism Mus musculus
Characteristics strain: B6
culture medium: ISM1
Extracted molecule total RNA
Extraction protocol 150 ng of total DNA-free RNA was used as input for labelled cRNA synthesis (Illumna TotalPrep RNA Amplification Kit - Ambion) following the manufacturer's instructions (IVT: 12h)
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 2
Data processing The bead intensities were mapped to gene information using BeadStudio 3.2 (Illumina),background correction was perform using the Affymetrix Robust Multi-array Analysis (RMA) background correction model,variance stabilization was performed using the log2 scaling and gene expression normalization was calculated with the quantile method implemented in the lumi package of R-Bioconductor.
 
Submission date Aug 16, 2011
Last update date Jan 15, 2022
Contact name Marcos J. Araúzo-Bravo
E-mail(s) mararabra@yahoo.co.uk
Phone +34 943 00 6108
Organization name Max Planck Institute for Molecular Biomedicine
Department Cell and Developmental Biology
Lab Computational Biology and Bionformatics
Street address Rogentstrasse
City Muenster
ZIP/Postal code 48149
Country Germany
 
Platform ID GPL6885
Series (1)
GSE31414 ART culture conditions change the probability of mouse embryo gestation through defined cellular and molecular responses

Data table header descriptions
ID_REF
VALUE quantile normalized signal

Data table
ID_REF VALUE
ILMN_1212607 4.418050
ILMN_1212612 2.365232
ILMN_1212619 2.334148
ILMN_1212628 2.388867
ILMN_1212632 3.227141
ILMN_1212636 12.735219
ILMN_1212637 9.385583
ILMN_1212645 10.518553
ILMN_1212648 6.805024
ILMN_1212653 2.851755
ILMN_1212672 9.181364
ILMN_1212682 3.423518
ILMN_1212683 3.359873
ILMN_1212685 2.284154
ILMN_1212692 4.977051
ILMN_1212693 2.042819
ILMN_1212695 2.189959
ILMN_1212698 1.877515
ILMN_1212702 2.805489
ILMN_1212703 4.604693

Total number of rows: 25697

Table truncated, full table size 554 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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