NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM779407 Query DataSets for GSM779407
Status Public on May 03, 2012
Title B6vivo rep3
Sample type RNA
 
Source name B6vivo rep3
Organism Mus musculus
Characteristics strain: B6
growth condition: in vivo
Extracted molecule total RNA
Extraction protocol 150 ng of total DNA-free RNA was used as input for labelled cRNA synthesis (Illumna TotalPrep RNA Amplification Kit - Ambion) following the manufacturer's instructions (IVT: 12h)
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 3
Data processing The bead intensities were mapped to gene information using BeadStudio 3.2 (Illumina),background correction was perform using the Affymetrix Robust Multi-array Analysis (RMA) background correction model,variance stabilization was performed using the log2 scaling and gene expression normalization was calculated with the quantile method implemented in the lumi package of R-Bioconductor.
 
Submission date Aug 16, 2011
Last update date Jan 15, 2022
Contact name Marcos J. Araúzo-Bravo
E-mail(s) mararabra@yahoo.co.uk
Phone +34 943 00 6108
Organization name Max Planck Institute for Molecular Biomedicine
Department Cell and Developmental Biology
Lab Computational Biology and Bionformatics
Street address Rogentstrasse
City Muenster
ZIP/Postal code 48149
Country Germany
 
Platform ID GPL6885
Series (1)
GSE31414 ART culture conditions change the probability of mouse embryo gestation through defined cellular and molecular responses

Data table header descriptions
ID_REF
VALUE quantile normalized signal

Data table
ID_REF VALUE
ILMN_1212607 4.766187
ILMN_1212612 2.864717
ILMN_1212619 2.650560
ILMN_1212628 3.084663
ILMN_1212632 3.313278
ILMN_1212636 12.676434
ILMN_1212637 9.396957
ILMN_1212645 10.570396
ILMN_1212648 6.878927
ILMN_1212653 3.511432
ILMN_1212672 9.095877
ILMN_1212682 4.292652
ILMN_1212683 2.064674
ILMN_1212685 2.839259
ILMN_1212692 5.783735
ILMN_1212693 2.119533
ILMN_1212695 2.479472
ILMN_1212698 1.765125
ILMN_1212702 4.933117
ILMN_1212703 4.743024

Total number of rows: 25697

Table truncated, full table size 554 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap