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Sample GSM786620 Query DataSets for GSM786620
Status Public on Apr 23, 2012
Title FGFko eWAT chow-A
Sample type RNA
 
Source name FGF1 null mouse eWAT on chow
Organism Mus musculus
Characteristics genotype/variation: FGF1 null
age: 24 weeks old
treatment: Normal chow diet
tissue: epidydimal white adipose tissue
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description FGF1 null mouse eWAT on chow, technical replicate 1
Data processing The data were normalized using cubic spline in Illumina GenomeStudio and also using the VAMPIRE Bayesian model with a 2-sided Bonferroni-corrected threshold of 0.05.
 
Submission date Aug 26, 2011
Last update date Apr 23, 2012
Contact name Ruth T Yu
Organization name Salk Institute
Department Gene Expression Lab
Lab Ronald Evans
Street address 10010 N Torrey Pines Rd
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL6885
Series (1)
GSE31692 A PPARĪ³-FGF1 axis is required for adaptive adipose remodeling

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 4978.323 0
ILMN_2721178 976.5784 0
ILMN_3033922 2190.426 0
ILMN_3092673 10342.29 0
ILMN_2816356 96.67037 0.8596491
ILMN_2808939 562.9583 0
ILMN_2634564 312.2661 0
ILMN_2737647 120.4364 0.0689223
ILMN_2734484 562.3927 0
ILMN_2952292 184.4076 0
ILMN_2699078 105.952 0.4197995
ILMN_1213681 488.9186 0
ILMN_2735413 135.057 0.005012531
ILMN_2735415 136.7585 0.002506266
ILMN_2891688 717.8575 0
ILMN_2637698 2712.013 0
ILMN_2674228 361.5349 0
ILMN_2601546 118.0449 0.0952381
ILMN_1230831 103.1517 0.5513784
ILMN_2848071 100.6805 0.6929824

Total number of rows: 25697

Table truncated, full table size 703 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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