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Sample GSM786622 Query DataSets for GSM786622
Status Public on Apr 23, 2012
Title WT eWAT chow-A
Sample type RNA
 
Source name wild-type mouse eWAT on chow
Organism Mus musculus
Characteristics genotype/variation: wild-type
age: 24 weeks old
treatment: Normal chow diet
tissue: epidydimal white adipose tissue
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description wild-type mouse eWAT on chow, technical replicate 1
Data processing The data were normalized using cubic spline in Illumina GenomeStudio and also using the VAMPIRE Bayesian model with a 2-sided Bonferroni-corrected threshold of 0.05.
 
Submission date Aug 26, 2011
Last update date Apr 23, 2012
Contact name Ruth T Yu
Organization name Salk Institute
Department Gene Expression Lab
Lab Ronald Evans
Street address 10010 N Torrey Pines Rd
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL6885
Series (1)
GSE31692 A PPARĪ³-FGF1 axis is required for adaptive adipose remodeling

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 3880.976 0
ILMN_2721178 910.6132 0
ILMN_3033922 3011.292 0
ILMN_3092673 13046.41 0
ILMN_2816356 118.5483 0.04636591
ILMN_2808939 657.5234 0
ILMN_2634564 284.5464 0
ILMN_2737647 104.2303 0.4385965
ILMN_2734484 522.0447 0
ILMN_2952292 152.5972 0
ILMN_2699078 107.081 0.3157895
ILMN_1213681 521.0131 0
ILMN_2735413 118.9594 0.03884712
ILMN_2735415 178.8327 0
ILMN_2891688 677.4881 0
ILMN_2637698 1257.061 0
ILMN_2674228 300.933 0
ILMN_2601546 100.9102 0.6353384
ILMN_1230831 98.85601 0.7393484
ILMN_2848071 94.57916 0.9197995

Total number of rows: 25697

Table truncated, full table size 697 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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