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Sample GSM786626 Query DataSets for GSM786626
Status Public on Apr 23, 2012
Title WT liver HFD-A
Sample type RNA
 
Source name wild-type mouse liver on HFD
Organism Mus musculus
Characteristics genotype/variation: wild-type
age: 24 weeks old
treatment: High-fat diet
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description wild-type mouse liver on HFD, technical replicate 1
Data processing The data were normalized using cubic spline in Illumina GenomeStudio and also using the VAMPIRE Bayesian model with a 2-sided Bonferroni-corrected threshold of 0.05.
 
Submission date Aug 26, 2011
Last update date Apr 23, 2012
Contact name Ruth T Yu
Organization name Salk Institute
Department Gene Expression Lab
Lab Ronald Evans
Street address 10010 N Torrey Pines Rd
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL6885
Series (1)
GSE31692 A PPARĪ³-FGF1 axis is required for adaptive adipose remodeling

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 3065.866 0
ILMN_2721178 886.4434 0
ILMN_3033922 1672.46 0
ILMN_3092673 6941.19 0
ILMN_2816356 118.9295 0.216792
ILMN_2808939 2495.885 0
ILMN_2634564 503.4958 0
ILMN_2737647 132.4179 0.1102757
ILMN_2734484 587.5606 0
ILMN_2952292 306.1663 0
ILMN_2699078 105.0336 0.5551379
ILMN_1213681 515.9991 0
ILMN_2735413 833.3677 0
ILMN_2735415 1233.136 0
ILMN_2891688 1039.294 0
ILMN_2637698 1152.485 0
ILMN_2674228 374.4477 0
ILMN_2601546 131.3116 0.1140351
ILMN_1230831 113.7856 0.2857143
ILMN_2848071 1276.553 0

Total number of rows: 25697

Table truncated, full table size 734 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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