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Sample GSM786627 Query DataSets for GSM786627
Status Public on Apr 23, 2012
Title WT liver HFD-B
Sample type RNA
Source name wild-type mouse liver on HFD
Organism Mus musculus
Characteristics genotype/variation: wild-type
age: 24 weeks old
treatment: High-fat diet
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description wild-type mouse liver on HFD, technical replicate 2
Data processing The data were normalized using cubic spline in Illumina GenomeStudio and also using the VAMPIRE Bayesian model with a 2-sided Bonferroni-corrected threshold of 0.05.
Submission date Aug 26, 2011
Last update date Apr 23, 2012
Contact name Ruth T Yu
Organization name Salk Institute
Department Gene Expression Lab
Lab Ronald Evans
Street address 10010 N Torrey Pines Rd
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
Platform ID GPL6885
Series (1)
GSE31692 A PPARĪ³-FGF1 axis is required for adaptive adipose remodeling

Data table header descriptions
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 3342.991 0
ILMN_2721178 1121.877 0
ILMN_3033922 1912.601 0
ILMN_3092673 7915.465 0
ILMN_2816356 107.6322 0.4573935
ILMN_2808939 2568.37 0
ILMN_2634564 470.4815 0
ILMN_2737647 110.7821 0.3746867
ILMN_2734484 624.9394 0
ILMN_2952292 277.0009 0
ILMN_2699078 127.088 0.1654135
ILMN_1213681 545.5973 0
ILMN_2735413 855.6173 0
ILMN_2735415 1202.119 0
ILMN_2891688 893.6758 0
ILMN_2637698 1228.162 0
ILMN_2674228 353.3689 0
ILMN_2601546 128.7341 0.1566416
ILMN_1230831 101.3447 0.7017544
ILMN_2848071 886.0807 0

Total number of rows: 25697

Table truncated, full table size 737 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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