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Sample GSM786628 Query DataSets for GSM786628
Status Public on Apr 23, 2012
Title FGFko liver HFD-A
Sample type RNA
Source name FGF1 null mouse liver on HFD
Organism Mus musculus
Characteristics genotype/variation: FGF1 null
age: 24 weeks old
treatment: High-fat diet
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description FGF1 null mouse liver on HFD, technical replicate 1
Data processing The data were normalized using cubic spline in Illumina GenomeStudio and also using the VAMPIRE Bayesian model with a 2-sided Bonferroni-corrected threshold of 0.05.
Submission date Aug 26, 2011
Last update date Apr 23, 2012
Contact name Ruth T Yu
Organization name Salk Institute
Department Gene Expression Lab
Lab Ronald Evans
Street address 10010 N Torrey Pines Rd
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
Platform ID GPL6885
Series (1)
GSE31692 A PPARĪ³-FGF1 axis is required for adaptive adipose remodeling

Data table header descriptions
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 3803.859 0
ILMN_2721178 1215.179 0
ILMN_3033922 1808.357 0
ILMN_3092673 7140.319 0
ILMN_2816356 99.25849 0.8095238
ILMN_2808939 1523.301 0
ILMN_2634564 488.6218 0
ILMN_2737647 100.0914 0.7756892
ILMN_2734484 604.5068 0
ILMN_2952292 287.7412 0
ILMN_2699078 135.9794 0.0989975
ILMN_1213681 556.8416 0
ILMN_2735413 667.1498 0
ILMN_2735415 976.7582 0
ILMN_2891688 1010.484 0
ILMN_2637698 1295.455 0
ILMN_2674228 337.6786 0
ILMN_2601546 108.8897 0.4223058
ILMN_1230831 108.21 0.4498747
ILMN_2848071 607.3825 0

Total number of rows: 25697

Table truncated, full table size 734 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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