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Sample GSM786630 Query DataSets for GSM786630
Status Public on Apr 23, 2012
Title WT liver chow-A
Sample type RNA
Source name wild-type mouse liver on chow
Organism Mus musculus
Characteristics genotype/variation: wild-type
age: 24 weeks old
treatment: Normal chow diet
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description wild-type mouse liver on chow, technical replicate 1
Data processing The data were normalized using cubic spline in Illumina GenomeStudio and also using the VAMPIRE Bayesian model with a 2-sided Bonferroni-corrected threshold of 0.05.
Submission date Aug 26, 2011
Last update date Apr 23, 2012
Contact name Ruth T Yu
Organization name Salk Institute
Department Gene Expression Lab
Lab Ronald Evans
Street address 10010 N Torrey Pines Rd
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
Platform ID GPL6885
Series (1)
GSE31692 A PPARĪ³-FGF1 axis is required for adaptive adipose remodeling

Data table header descriptions
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 3154.931 0
ILMN_2721178 1027.572 0
ILMN_3033922 1680.94 0
ILMN_3092673 8431.67 0
ILMN_2816356 104.4362 0.6190476
ILMN_2808939 1791.617 0
ILMN_2634564 511.566 0
ILMN_2737647 123.2018 0.2393484
ILMN_2734484 745.5644 0
ILMN_2952292 299.9048 0
ILMN_2699078 110.365 0.4548872
ILMN_1213681 550.9571 0
ILMN_2735413 981.1097 0
ILMN_2735415 1191.406 0
ILMN_2891688 875.6708 0
ILMN_2637698 1240.672 0
ILMN_2674228 397.48 0
ILMN_2601546 114.3898 0.3621554
ILMN_1230831 93.82911 0.962406
ILMN_2848071 853.0662 0

Total number of rows: 25697

Table truncated, full table size 737 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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