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Sample GSM786633 Query DataSets for GSM786633
Status Public on Apr 23, 2012
Title FGFko liver chow-B
Sample type RNA
 
Source name FGF1 null mouse liver on chow
Organism Mus musculus
Characteristics genotype/variation: FGF1 null
age: 24 weeks old
treatment: Normal chow diet
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description FGF1 null mouse liver on chow, technical replicate 2
Data processing The data were normalized using cubic spline in Illumina GenomeStudio and also using the VAMPIRE Bayesian model with a 2-sided Bonferroni-corrected threshold of 0.05.
 
Submission date Aug 26, 2011
Last update date Apr 23, 2012
Contact name Ruth T Yu
Organization name Salk Institute
Department Gene Expression Lab
Lab Ronald Evans
Street address 10010 N Torrey Pines Rd
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL6885
Series (1)
GSE31692 A PPARĪ³-FGF1 axis is required for adaptive adipose remodeling

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2684.506 0
ILMN_2721178 848.5007 0
ILMN_3033922 2088.36 0
ILMN_3092673 7541.309 0
ILMN_2816356 123.7957 0.1942356
ILMN_2808939 1981.32 0
ILMN_2634564 649.3841 0
ILMN_2737647 117.0363 0.2631579
ILMN_2734484 564.0006 0
ILMN_2952292 244.0148 0
ILMN_2699078 97.8976 0.8646616
ILMN_1213681 533.7931 0
ILMN_2735413 1065.111 0
ILMN_2735415 1349.022 0
ILMN_2891688 830.4908 0
ILMN_2637698 1228.213 0
ILMN_2674228 382.0008 0
ILMN_2601546 161.295 0.0651629
ILMN_1230831 101.3064 0.7218045
ILMN_2848071 1053.693 0

Total number of rows: 25697

Table truncated, full table size 735 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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