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Sample GSM786961 Query DataSets for GSM786961
Status Public on Jan 01, 2012
Title IL-10-/- with Pathology > 3
Sample type RNA
 
Channel 1
Source name IL-10-/- Colon
Organism Mus musculus
Characteristics strain background: BALB/c
genotype/variation: IL-10 -/-
tissue: colon
pathology: severe pathology
Extracted molecule total RNA
Extraction protocol Total RNA extracted using miRNeasy following the manufacturer's instructions
Label Cy3
Label protocol Samples were labeled using the miRCURY Hy3/Hy5 Power labeling kit following the manufacturer's instructions
 
Channel 2
Source name Common Reference (Samples 1, 2, and 3)
Organism Mus musculus
Characteristics strain background: BALB/c
tissue: colon
Extracted molecule total RNA
Extraction protocol Total RNA extracted using miRNeasy following the manufacturer's instructions
Label Cy5
Label protocol Samples were labeled using the miRCURY Hy3/Hy5 Power labeling kit following the manufacturer's instructions
 
 
Hybridization protocol Samples were hybridized using a Tecan HS4800™ Pro automated hybridization station
Scan protocol Agilent G2505B Microarray Scanners
Description Severe Pathology. Pooled total RNA from 3 mice.
Data processing LOWESS normalized, background subtracted data obtained from log2 of processed Green signal/processed Red signal. Agilent software was used.
 
Submission date Aug 29, 2011
Last update date Jan 01, 2012
Contact name Jeremy S Schaefer
E-mail(s) Jeremy.Schaefer@uth.tmc.edu
Phone 713-486-4107
Organization name The University of Texas Health Science Center at Houston School of Dentistry
Department Diagnostic Sciences
Lab John Klein
Street address 1941 East Rd
City Houston
State/province TX
ZIP/Postal code 77054
Country USA
 
Platform ID GPL7723
Series (1)
GSE31706 Murine colon: IL-10-/- versus BALB/c

Data table header descriptions
ID_REF
VALUE normalized log2 ratio (Cy3/Cy5) representing test/reference

Data table
ID_REF VALUE
42668
46437 -0.144245274
42505 -0.130139989
46436 -0.097174252
46435 0.05587924
42768
46438 -0.077628235
42778
9938 0.360123197
42534
10916 -0.650181992
19581 -0.680858622
31026 -0.20360099
17935
42953 -0.118371198
10919 -0.257149459
42851
19599 0.34953484
19582 0.27661049
17854

Total number of rows: 664

Table truncated, full table size 8 Kbytes.




Supplementary file Size Download File type/resource
GSM786961_cy3_1_Exiqon_14123806_S01.txt.gz 887.7 Kb (ftp)(http) TXT
GSM786961_cy5_0_Exiqon_14123806_S01.txt.gz 782.6 Kb (ftp)(http) TXT
Processed data included within Sample table

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