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Sample GSM787281 Query DataSets for GSM787281
Status Public on Aug 30, 2011
Title Normal S100A4+ stromal cells
Sample type RNA
 
Source name S100A4+ stromal cells from normal lung
Organism Mus musculus
Characteristics strain: BALB/c
source tissue: normal lung
cell type: S100A4+ Stromal Cells
Extracted molecule total RNA
Extraction protocol RNA was extracted with the Qiagen RNeasy plus micro kit.
Label biotin
Label protocol Biotinylated cRNA was prepared with the NuGEN WT-Ovation Pico Kit according to the technical notes for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing Data was normalized by rank invariant normalization with BeadStudio.
 
Submission date Aug 29, 2011
Last update date Aug 30, 2011
Contact name Joyce Tse O'Connell
E-mail(s) jtse@bidmc.harvard.edu
Organization name Beth Israel Deaconess Medical Center and Harvard Medical School
Department Division of Matrix Biology, Department of Medicine
Lab Kalluri Lab
Street address 330 Brookline Avenue
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL6885
Series (1)
GSE31711 S100A4+ Stromal Cells from Normal Lung vs. Metastatic Lung

Data table header descriptions
ID_REF
VALUE rank invariant normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1248788 79.94924 0.122807
ILMN_2707227 82.95906 0.0802005
ILMN_2896528 186.331 0
ILMN_2721178 88.81142 0.02631579
ILMN_1227723 243.3313 0
ILMN_3033922 124.3379 0.001253133
ILMN_3092673 843.3018 0
ILMN_2730714 1322.056 0
ILMN_3162224 385.5819 0
ILMN_2816356 88.67145 0.02756892
ILMN_2808939 219.0662 0
ILMN_2634564 851.5861 0
ILMN_1216623 990.7834 0
ILMN_1215157 1140.72 0
ILMN_1228777 112.232 0.001253133
ILMN_2737647 84.66812 0.05137845
ILMN_1216425 73.85323 0.3421053
ILMN_2734484 184.6006 0
ILMN_2652961 154.7963 0
ILMN_2952292 130.757 0.001253133

Total number of rows: 25697

Table truncated, full table size 747 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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