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Sample GSM787282 Query DataSets for GSM787282
Status Public on Aug 30, 2011
Title Metastatic S100A4+ stromal cells
Sample type RNA
 
Source name S100A4+ stromal cells from metastatic lung
Organism Mus musculus
Characteristics strain: BALB/c
source tissue: metastatic lung
cell type: S100A4+ Stromal Cells
Extracted molecule total RNA
Extraction protocol RNA was extracted with the Qiagen RNeasy plus micro kit.
Label biotin
Label protocol Biotinylated cRNA was prepared with the NuGEN WT-Ovation Pico Kit according to the technical notes for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing Data was normalized by rank invariant normalization with BeadStudio.
 
Submission date Aug 29, 2011
Last update date Aug 30, 2011
Contact name Joyce Tse O'Connell
E-mail(s) jtse@bidmc.harvard.edu
Organization name Beth Israel Deaconess Medical Center and Harvard Medical School
Department Division of Matrix Biology, Department of Medicine
Lab Kalluri Lab
Street address 330 Brookline Avenue
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL6885
Series (1)
GSE31711 S100A4+ Stromal Cells from Normal Lung vs. Metastatic Lung

Data table header descriptions
ID_REF
VALUE rank invariant normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1248788 80.29667 0.7756892
ILMN_2707227 93.54032 0.08897243
ILMN_2896528 161.192 0.001253133
ILMN_2721178 90.4302 0.1503759
ILMN_1227723 185.5696 0.001253133
ILMN_3033922 110.6992 0.005012531
ILMN_3092673 582.1741 0
ILMN_2730714 1211.161 0
ILMN_3162224 399.4009 0
ILMN_2816356 98.30761 0.03508772
ILMN_2808939 195.685 0
ILMN_2634564 712.5322 0
ILMN_1216623 844.8243 0
ILMN_1215157 964.7337 0
ILMN_1228777 139.3291 0.001253133
ILMN_2737647 88.47623 0.2117794
ILMN_1216425 84.55225 0.4724311
ILMN_2734484 167.543 0.001253133
ILMN_2652961 167.1498 0.001253133
ILMN_2952292 139.5383 0.001253133

Total number of rows: 25697

Table truncated, full table size 764 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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