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Sample GSM78879

Query DataSets for GSM78879

Status

Public on Oct 25, 2005

Title

Radium Human 22k v2.0, NOWAC01

Sample type

RNA

Channel 1

Source name

Stratagen reference

Organism

Characteristics

Stratagen reference

Extracted molecule

total RNA

Label

Cy3

Label protocol

Agilent Low RNA Input Fluorescent Linear Amplification Kit (Product Number 5184-3523).300 ng of total RNA were amplified and labeled

Channel 2

Source name

NOWAC01

Organism

Characteristics

HRT use 10.5 pmol/ug cRNA

Extracted molecule

total RNA

Label

Cy5

Label protocol

Agilent Low RNA Input Fluorescent Linear Amplification Kit (Product Number 5184-3523).300 ng of total RNA were amplified and labeled

Hybridization protocol

use of stabilization and drying solution, Agilent, Palo Alto, CA

Description

Whole blood samples collectedin PAXgene tubes

Data processing

Agilent Feature Extraction software version A.7.5.1 (default settings)

Submission date

Oct 20, 2005

Last update date

Oct 21, 2005

Contact name

Vanessa Dumeaux

E-mail(s)

vanessad@rr-research.no

Organization name

"The Norwegian Women and Cancer project"

Street address

University of Tromsoe

City

Tromsoe

ZIP/Postal code

9037

Country

Norway

Platform ID

Series (1)

Whole-blood samples from women exposed to hormone replacement therapy

Data table header descriptions
ID_REF
VALUE	Log (base 10) of the ratio of the processed signals of Channel 2 to Channel 1
Cy5MeanSignal	Raw mean signal of feature in Cy5 channel
Cy3MeanSignal	Raw mean signal of feature in Cy3 channel
Cy5BGMedianSignal	Median local background signal (local to corresponding feature) for Cy5 channel
Cy3BGMedianSignal	Median local background signal (local to corresponding feature) for Cy3 channel
Cy5BGMeanSignal	Mean local background signal (local to corresponding feature) for Cy5 channel
Cy3BGMeanSignal	Mean local background signal (local to corresponding feature) for Cy3 channel
Cy5ProcessedSignal	Dye-normalized signal for Cy5 channel after surrogate algorithm. Used for computation of VALUE
Cy3ProcessedSignal	Dye-normalized signal for Cy3 channel after surrogate algorithm. Used for computation of VALUE

Data table
ID_REF	VALUE	Cy5MeanSignal	Cy3MeanSignal	Cy5BGMedianSignal	Cy3BGMedianSignal	Cy5BGMeanSignal	Cy3BGMeanSignal	Cy5ProcessedSignal	Cy3ProcessedSignal
1	null	98.68421	538.9123	46	56	45.64945	55.73432	211.5582	1953.932
2	null	70.35	218.2167	45	56	45.24643	56.26071	55.58028	82.28806
3	null	91.45614	253.7719	46	56	45.57463	55.93657	193.3673	286.2534
4	null	462.0328	917.2295	46	56	45.54182	56.05091	2476.461	4761.696
5	null	256.8906	411.3594	46	56	45.49425	55.9272	1245.449	1368.753
6	null	81.60377	258.9434	45	55	45.15074	55.55882	111.2284	298.9335
7	null	93.95082	844.5902	45	57	45.22677	56.73606	171.2882	3831.866
8	null	342.1667	452.6481	46	56	45.8	56.05091	1780.444	1660.565
9	null	217.9048	336.4127	45.5	55	45.63504	55.77737	1023.3	875.415
10	null	77.22034	192.661	46	56	46.08487	56.08487	97.06837	14.41811
11	null	100.7302	193.2698	46	56	46.20144	55.88849	349.4718	18.10338
12	null	84.86792	287.5472	45	56	45.61029	56.83088	135.3303	457.1127
13	null	73.21311	188.4754	45	57	45.70182	56.37091	87.44762	10.40321
14	null	90.56667	875.8833	46	58	45.5438	57.57664	149.9238	3994.234
15	null	778.5172	1013.862	45	58	45.66418	58.20522	4449.564	5444.655
16	0.3731067832	118.2069	226.6379	46	57	45.86347	57.55351	422.7192	179.038
17	null	71.62712	220.0847	46	56.5	45.48529	56.57353	43.5986	111.7781
18	0.1839314439	212.7321	301.5714	46	58	45.9283	58.10189	1011.449	662.2359
20	-0.5162257799	85.17857	285.9643	46	58	46	58.63566	139.5997	458.2584
21	null	93.14286	952.2698	46	59	46.0106	59.22615	166.5594	4528.379

Total number of rows: 22153

Table truncated, full table size 1669 Kbytes.

Supplementary data files not provided

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