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Sample GSM78883 Query DataSets for GSM78883
Status Public on Oct 25, 2005
Title Radium Human 22k v2.0, NOWAC14
Sample type RNA
 
Channel 1
Source name Stratagen reference
Organism Homo sapiens
Characteristics Stratagen reference
Extracted molecule total RNA
Label Cy3
Label protocol Agilent Low RNA Input Fluorescent Linear Amplification Kit (Product Number 5184-3523).300 ng of total RNA were amplified and labeled
 
Channel 2
Source name NOWAC14
Organism Homo sapiens
Characteristics HRT use 11.6 pmol/ug cRNA
Extracted molecule total RNA
Label Cy5
Label protocol Agilent Low RNA Input Fluorescent Linear Amplification Kit (Product Number 5184-3523).300 ng of total RNA were amplified and labeled
 
 
Hybridization protocol use of stabilization and drying solution, Agilent, Palo Alto, CA
Description Whole blood samples collectedin PAXgene tubes
Data processing Agilent Feature Extraction software version A.7.5.1 (default settings)
 
Submission date Oct 20, 2005
Last update date Oct 21, 2005
Contact name Vanessa Dumeaux
E-mail(s) vanessad@rr-research.no
Organization name "The Norwegian Women and Cancer project"
Street address University of Tromsoe
City Tromsoe
ZIP/Postal code 9037
Country Norway
 
Platform ID GPL887
Series (1)
GSE3492 Whole-blood samples from women exposed to hormone replacement therapy

Data table header descriptions
ID_REF
VALUE Log (base 10) of the ratio of the processed signals of Channel 2 to Channel 1
Cy5MeanSignal Raw mean signal of feature in Cy5 channel
Cy3MeanSignal Raw mean signal of feature in Cy3 channel
Cy5BGMedianSignal Median local background signal (local to corresponding feature) for Cy5 channel
Cy3BGMedianSignal Median local background signal (local to corresponding feature) for Cy3 channel
Cy5BGMeanSignal Mean local background signal (local to corresponding feature) for Cy5 channel
Cy3BGMeanSignal Mean local background signal (local to corresponding feature) for Cy3 channel
Cy5ProcessedSignal Dye-normalized signal for Cy5 channel after surrogate algorithm. Used for computation of VALUE
Cy3ProcessedSignal Dye-normalized signal for Cy3 channel after surrogate algorithm. Used for computation of VALUE

Data table
ID_REF VALUE Cy5MeanSignal Cy3MeanSignal Cy5BGMedianSignal Cy3BGMedianSignal Cy5BGMeanSignal Cy3BGMeanSignal Cy5ProcessedSignal Cy3ProcessedSignal
1 null 83.38889 849.1852 46 68 46.22759 68.65517 199.6028 3967.814
2 null 72.88462 229.8462 46 69 46.40569 68.98221 83.00661 161.3154
3 null 82.35484 252.6935 46 69 45.98917 70.1083 226.6308 290.7356
4 -0.2352552917 191.3684 620.807 47 70 46.98601 70.72378 1577.489 2711.575
5 null 176.4746 391.661 46 71 46.14894 71.44681 1412.422 1233.735
6 null 83.05172 241.6379 46 70 46.19853 70.89706 240.7322 235.2715
7 null 72.72414 750.6897 46 70 46.08303 70.60289 62.43978 3059.695
8 null 276.4603 315.3651 46 71 46.05455 71.81818 2710.827 764.502
9 null 117.4762 271.873 46 70 46.5784 70.05575 695.081 452.1025
10 null 68.08333 207.1333 46 70 46.56383 70.97163 57.44373 99.24156
11 null 73 207.1754 47 72 46.8913 71.96014 78.00776 66.53583
12 -0.4027069782 75.20833 253.2708 47 72 46.97535 72.12324 113.067 285.7873
13 null 66.95082 185.8852 47 71 46.74658 71.56849 51.98858 55.53453
14 -1.638408263 74.32075 807.6604 47 71 46.85357 71.28929 80.41214 3497.276
15 null 365.6897 906.7414 46 73 46.0493 73.22887 3711.106 4667.961
16 null 82.48148 193.9259 47 73 46.81071 73.775 240.6196 33.77849
17 null 69.33898 201.2712 46 74 46.33582 74.75 71.88762 40.43239
18 null 102.6909 247.3455 47 72 46.54182 73.09455 512.8177 302.0774
20 -0.3899994287 76.76271 260.339 47 72 46.69286 72.26429 135.605 332.8704
21 null 71.78571 882.0357 46 71 46.44444 72.17921 67.41783 3762.078

Total number of rows: 22153

Table truncated, full table size 1659 Kbytes.




Supplementary data files not provided

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