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Sample GSM78902

Query DataSets for GSM78902

Status

Public on Oct 25, 2005

Title

Radium Human 22k v2.0, NOWAC63

Sample type

RNA

Channel 1

Source name

Stratagen reference

Organism

Characteristics

Stratagen reference

Extracted molecule

total RNA

Label

Cy3

Label protocol

Agilent Low RNA Input Fluorescent Linear Amplification Kit (Product Number 5184-3523).300 ng of total RNA were amplified and labeled

Channel 2

Source name

NOWAC63

Organism

Characteristics

HRT use 15.4 pmol/ug cRNA

Extracted molecule

total RNA

Label

Cy5

Label protocol

Agilent Low RNA Input Fluorescent Linear Amplification Kit (Product Number 5184-3523).300 ng of total RNA were amplified and labeled

Hybridization protocol

use of stabilization and drying solution, Agilent, Palo Alto, CA

Description

Whole blood samples collectedin PAXgene tubes

Data processing

Agilent Feature Extraction software version A.7.5.1 (default settings)

Submission date

Oct 20, 2005

Last update date

Oct 21, 2005

Contact name

Vanessa Dumeaux

E-mail(s)

vanessad@rr-research.no

Organization name

"The Norwegian Women and Cancer project"

Street address

University of Tromsoe

City

Tromsoe

ZIP/Postal code

9037

Country

Norway

Platform ID

Series (1)

Whole-blood samples from women exposed to hormone replacement therapy

Data table header descriptions
ID_REF
VALUE	Log (base 10) of the ratio of the processed signals of Channel 2 to Channel 1
Cy5MeanSignal	Raw mean signal of feature in Cy5 channel
Cy3MeanSignal	Raw mean signal of feature in Cy3 channel
Cy5BGMedianSignal	Median local background signal (local to corresponding feature) for Cy5 channel
Cy3BGMedianSignal	Median local background signal (local to corresponding feature) for Cy3 channel
Cy5BGMeanSignal	Mean local background signal (local to corresponding feature) for Cy5 channel
Cy3BGMeanSignal	Mean local background signal (local to corresponding feature) for Cy3 channel
Cy5ProcessedSignal	Dye-normalized signal for Cy5 channel after surrogate algorithm. Used for computation of VALUE
Cy3ProcessedSignal	Dye-normalized signal for Cy3 channel after surrogate algorithm. Used for computation of VALUE

Data table
ID_REF	VALUE	Cy5MeanSignal	Cy3MeanSignal	Cy5BGMedianSignal	Cy3BGMedianSignal	Cy5BGMeanSignal	Cy3BGMeanSignal	Cy5ProcessedSignal	Cy3ProcessedSignal
1	-1.357142245	96.25	1138.732	46	53	45.66787	52.91336	324.9796	7396.024
2	null	58.58491	127.7547	46	54	46.14947	53.64413	66.26643	28.18102
3	null	76.84746	138.0339	45	53	45.59489	53.39051	194.4663	87.25893
4	null	596.6136	801.1591	45	54	45.44043	53.80866	4222.756	5316.852
5	null	202.4746	316.8983	45	54	45.21034	53.92759	1230.732	1396.151
6	null	71.12069	147.1034	45	53	45.76895	54.31769	133.9584	141.5964
7	null	64.56897	1111.638	46	54	46.3299	54.29553	56.9913	7101.351
8	null	485.537	285.6296	46	55	46.51439	55.10072	3543.444	1199.793
9	null	151.8333	247.3519	46	54	46.67128	54.65398	804.007	885.43
10	null	63.76	134.82	46	54	45.97491	54.60215	65.05111	58.47532
11	null	87.54	137.06	46	54	46.63004	54.663	293.3968	79.70801
12	null	70.43396	171.6604	45	54	45.97887	54.39789	118.6188	305.0891
13	null	65.30357	131.4107	46	53	45.78014	54.24468	82.38082	38.41362
14	null	74.5	1163.433	46	53	45.88971	53.00368	140.6261	7467.898
15	-0.08182064221	691.3898	880.4576	46	53	45.99643	53.10714	4938.565	5962.404
16	null	84.18966	139.3966	46	53	45.89753	54.14134	258.6079	92.07892
17	null	58.53571	132.8571	46	55	46.14964	54.65328	53.36043	39.3647
18	null	113.9286	154.9286	46	55	46.12803	54.75779	494.9231	209.4629
20	null	64.58621	154.8103	46	54	46.35739	55.0378	67.08945	175.1825
21	null	75.08475	1125.119	46	54	46.14894	54.98936	144.2921	7187.786

Total number of rows: 22153

Table truncated, full table size 1652 Kbytes.

Supplementary data files not provided

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