NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM78918 Query DataSets for GSM78918
Status Public on Oct 25, 2005
Title Radium Human 22k v2.0, NOWAC97
Sample type RNA
 
Channel 1
Source name Stratagen reference
Organism Homo sapiens
Characteristics Stratagen reference
Extracted molecule total RNA
Label Cy3
Label protocol Agilent Low RNA Input Fluorescent Linear Amplification Kit (Product Number 5184-3523).300 ng of total RNA were amplified and labeled
 
Channel 2
Source name NOWAC97
Organism Homo sapiens
Characteristics HRT use 9.5 pmol/ug cRNA
Extracted molecule total RNA
Label Cy5
Label protocol Agilent Low RNA Input Fluorescent Linear Amplification Kit (Product Number 5184-3523).300 ng of total RNA were amplified and labeled
 
 
Hybridization protocol use of stabilization and drying solution, Agilent, Palo Alto, CA
Description Whole blood samples collectedin PAXgene tubes
Data processing Agilent Feature Extraction software version A.7.5.1 (default settings)
 
Submission date Oct 20, 2005
Last update date Oct 21, 2005
Contact name Vanessa Dumeaux
E-mail(s) vanessad@rr-research.no
Organization name "The Norwegian Women and Cancer project"
Street address University of Tromsoe
City Tromsoe
ZIP/Postal code 9037
Country Norway
 
Platform ID GPL887
Series (1)
GSE3492 Whole-blood samples from women exposed to hormone replacement therapy

Data table header descriptions
ID_REF
VALUE Log (base 10) of the ratio of the processed signals of Channel 2 to Channel 1
Cy5MeanSignal Raw mean signal of feature in Cy5 channel
Cy3MeanSignal Raw mean signal of feature in Cy3 channel
Cy5BGMedianSignal Median local background signal (local to corresponding feature) for Cy5 channel
Cy3BGMedianSignal Median local background signal (local to corresponding feature) for Cy3 channel
Cy5BGMeanSignal Mean local background signal (local to corresponding feature) for Cy5 channel
Cy3BGMeanSignal Mean local background signal (local to corresponding feature) for Cy3 channel
Cy5ProcessedSignal Dye-normalized signal for Cy5 channel after surrogate algorithm. Used for computation of VALUE
Cy3ProcessedSignal Dye-normalized signal for Cy3 channel after surrogate algorithm. Used for computation of VALUE

Data table
ID_REF VALUE Cy5MeanSignal Cy3MeanSignal Cy5BGMedianSignal Cy3BGMedianSignal Cy5BGMeanSignal Cy3BGMeanSignal Cy5ProcessedSignal Cy3ProcessedSignal
1 -1.091617795 91.52632 729.6491 46 78 46.57092 78.77305 198.9251 2456.447
2 null 80.60345 318.7586 46 77 46.09253 78.6548 84.21778 169.3869
3 -0.2119130498 99.39286 386.6071 46 76 46.23488 78.00356 338.8221 551.9311
4 -0.4704490556 252.8519 1252.778 46 76 46.53846 77.33217 2102.047 6209.999
5 -0.1146990405 151.2963 497.7963 46 76 46.00719 77.96403 983.2026 1280.389
6 null 93.87273 354.2545 46 76 45.86232 78.72826 275.3815 373.0032
7 -1.2647627 84.90909 695.8 46 78 46.18015 79.9375 117.9916 2170.769
8 0.06831066595 171.4151 458.434 47 78 46.64085 79.57042 1248.601 1066.873
9 0.3147946789 182.5614 393.807 46 77.5 46.53521 79.0669 1418.731 687.2352
10 null 77.45 289.0833 46 76 46.04982 77.2847 78.79068 73.66318
11 0.4682527941 91.12069 293.7241 45 78 46.17958 79.28873 268.11 91.21374
12 -0.4304483354 85.01724 360.5172 46 79 46.51079 80.22302 145.7302 392.6431
13 null 76.125 283.8214 46 79 46.56187 79.74916 55.19039 87.96363
14 null 81.34921 686.3651 46 80 46.33096 80.62633 75.51294 2029.132
15 -0.1466127228 321.7119 919.7288 47 79 47.13929 79.83929 2939.78 4120.287
16 0.4838893003 87.03226 285.9839 47 80 46.91176 81.11029 202.1923 66.35525
17 null 75.87719 281.7719 46 80 46.60448 81.55224 48.53441 84.41755
18 null 112.0517 314.7931 46 81 46.06204 81.96715 570.123 219.993
20 -0.2911102657 87.10169 349.2881 46 79 46.50929 79.9145 185.8831 363.371
21 null 82.40678 713 47 81 46.77193 81.30175 94.07942 2248.522

Total number of rows: 22153

Table truncated, full table size 1655 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap