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Sample GSM78923

Query DataSets for GSM78923

Status

Public on Oct 25, 2005

Title

Radium Human 22k v2.0, NOWAC05

Sample type

RNA

Channel 1

Source name

Stratagen reference

Organism

Characteristics

Stratagen reference

Extracted molecule

total RNA

Label

Cy3

Label protocol

Agilent Low RNA Input Fluorescent Linear Amplification Kit (Product Number 5184-3523).300 ng of total RNA were amplified and labeled

Channel 2

Source name

NOWAC05

Organism

Characteristics

no HRT use 9.0 pmol/ug cRNA

Extracted molecule

total RNA

Label

Cy5

Label protocol

Agilent Low RNA Input Fluorescent Linear Amplification Kit (Product Number 5184-3523).300 ng of total RNA were amplified and labeled

Hybridization protocol

use of stabilization and drying solution, Agilent, Palo Alto, CA

Description

Whole blood samples collectedin PAXgene tubes

Data processing

Agilent Feature Extraction software version A.7.5.1 (default settings)

Submission date

Oct 20, 2005

Last update date

Oct 21, 2005

Contact name

Vanessa Dumeaux

E-mail(s)

vanessad@rr-research.no

Organization name

"The Norwegian Women and Cancer project"

Street address

University of Tromsoe

City

Tromsoe

ZIP/Postal code

9037

Country

Norway

Platform ID

Series (1)

Whole-blood samples from women exposed to hormone replacement therapy

Data table header descriptions
ID_REF
VALUE	Log (base 10) of the ratio of the processed signals of Channel 2 to Channel 1
Cy5MeanSignal	Raw mean signal of feature in Cy5 channel
Cy3MeanSignal	Raw mean signal of feature in Cy3 channel
Cy5BGMedianSignal	Median local background signal (local to corresponding feature) for Cy5 channel
Cy3BGMedianSignal	Median local background signal (local to corresponding feature) for Cy3 channel
Cy5BGMeanSignal	Mean local background signal (local to corresponding feature) for Cy5 channel
Cy3BGMeanSignal	Mean local background signal (local to corresponding feature) for Cy3 channel
Cy5ProcessedSignal	Dye-normalized signal for Cy5 channel after surrogate algorithm. Used for computation of VALUE
Cy3ProcessedSignal	Dye-normalized signal for Cy3 channel after surrogate algorithm. Used for computation of VALUE

Data table
ID_REF	VALUE	Cy5MeanSignal	Cy3MeanSignal	Cy5BGMedianSignal	Cy3BGMedianSignal	Cy5BGMeanSignal	Cy3BGMeanSignal	Cy5ProcessedSignal	Cy3ProcessedSignal
1	null	84.78333	965.4667	45	59.5	45.9375	59.32721	219.9689	3892.737
2	null	63.56863	221.2549	45	60	45.30496	60.36525	50.5619	23.04399
3	null	78.24138	226.5517	45	61	45.48364	61.64364	213.8604	19.81187
4	null	305.75	1035.5	45	61	45.5477	61.57951	2244.676	4715.114
5	null	139.5517	449	46	62	45.62007	61.8853	775.5757	1249.883
6	null	69.81818	231.4909	45	62	45.45126	61.8556	93.73696	86.99813
7	null	73.25397	930.0159	45	61	45.49632	61.1875	109.4097	3481.406
8	null	291.5	397.5179	46	61	45.55303	61.23106	2212.496	1036.444
9	null	129.9615	348.7115	45	61	45.52414	61.72759	712.8848	700.7217
10	null	62.0566	196.5283	46	62	46.16245	62.36823	42.73001	30.91368
11	null	80.53704	190.5926	46	63	45.65248	63.34043	157.0534	32.84289
12	null	66.61818	225.2182	46	65	46.34902	64.51765	51.64303	72.86285
13	null	61.75926	168.5556	46	65	45.84151	65.07925	39.44814	34.58757
14	null	89.85	1001.8	45	64	45.50373	64.07463	268.4759	4171.883
15	null	434.2459	1093.656	45	62	45.99245	62.42264	3429.095	5076.038
16	null	90.13725	217.8431	47	63	46.55516	63.11744	383.3288	48.69267
17	null	63.72414	238.1207	45	63	45.86617	63.27509	57.8754	133.2198
18	null	172.1481	260.4074	45	63	45.88727	63.13818	1213.674	266.5751
20	null	68.60714	267.7321	46	64	46.38577	63.99251	77.43441	237.6715
21	null	76.04918	1022.262	46	64	46.01079	64.17266	136.4271	4081.718

Total number of rows: 22153

Table truncated, full table size 1652 Kbytes.

Supplementary data files not provided

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