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Sample GSM78925 Query DataSets for GSM78925
Status Public on Oct 25, 2005
Title Radium Human 22k v2.0, NOWAC07
Sample type RNA
 
Channel 1
Source name Stratagen reference
Organism Homo sapiens
Characteristics Stratagen reference
Extracted molecule total RNA
Label Cy3
Label protocol Agilent Low RNA Input Fluorescent Linear Amplification Kit (Product Number 5184-3523).300 ng of total RNA were amplified and labeled
 
Channel 2
Source name NOWAC07
Organism Homo sapiens
Characteristics no HRT use 12.7 pmol/ug cRNA
Extracted molecule total RNA
Label Cy5
Label protocol Agilent Low RNA Input Fluorescent Linear Amplification Kit (Product Number 5184-3523).300 ng of total RNA were amplified and labeled
 
 
Hybridization protocol use of stabilization and drying solution, Agilent, Palo Alto, CA
Description Whole blood samples collectedin PAXgene tubes
Data processing Agilent Feature Extraction software version A.7.5.1 (default settings)
 
Submission date Oct 20, 2005
Last update date Oct 21, 2005
Contact name Vanessa Dumeaux
E-mail(s) vanessad@rr-research.no
Organization name "The Norwegian Women and Cancer project"
Street address University of Tromsoe
City Tromsoe
ZIP/Postal code 9037
Country Norway
 
Platform ID GPL887
Series (1)
GSE3492 Whole-blood samples from women exposed to hormone replacement therapy

Data table header descriptions
ID_REF
VALUE Log (base 10) of the ratio of the processed signals of Channel 2 to Channel 1
Cy5MeanSignal Raw mean signal of feature in Cy5 channel
Cy3MeanSignal Raw mean signal of feature in Cy3 channel
Cy5BGMedianSignal Median local background signal (local to corresponding feature) for Cy5 channel
Cy3BGMedianSignal Median local background signal (local to corresponding feature) for Cy3 channel
Cy5BGMeanSignal Mean local background signal (local to corresponding feature) for Cy5 channel
Cy3BGMeanSignal Mean local background signal (local to corresponding feature) for Cy3 channel
Cy5ProcessedSignal Dye-normalized signal for Cy5 channel after surrogate algorithm. Used for computation of VALUE
Cy3ProcessedSignal Dye-normalized signal for Cy3 channel after surrogate algorithm. Used for computation of VALUE

Data table
ID_REF VALUE Cy5MeanSignal Cy3MeanSignal Cy5BGMedianSignal Cy3BGMedianSignal Cy5BGMeanSignal Cy3BGMeanSignal Cy5ProcessedSignal Cy3ProcessedSignal
1 null 73.36538 892.9231 45 63 45.09286 63.05 28.31316 4179.782
2 null 72.0625 180.1458 44 60 44.36491 60.68421 39.78501 104.0467
3 null 80.33333 163.7667 44 60 44.62191 60.14134 88.88669 27.26063
4 null 353.8103 587.3793 45 61 44.79359 61.4306 1607.522 2750.807
5 null 164.1167 319.3167 44 63 44.20446 62.67658 547.623 1015.349
6 null 76.48276 174.1034 45 61 45.16151 61.69416 53.37631 79.86798
7 null 100.4 982.9 45 60 45.27273 60.68881 173.8403 5184.673
8 null 184.0169 223.3898 45 60 45.01423 60.83986 675.4985 408.7999
9 null 169.9592 250.1429 45 59 45.31786 59.9 587.1772 574.1797
10 null 64.83051 133.1356 45 59 45.17091 60.06909 60.11502 17.08738
11 null 73.59322 153.5932 45 58 44.76703 58.90323 57.0018 15.27995
12 null 74.6129 170.5968 45 58 44.85185 58.28148 35.68683 21.81477
13 null 69 147.3889 45 58 44.64338 58.0625 55.22615 15.75947
14 null 71.3125 996.3958 45 59 45.40809 58.87868 31.24792 4122.769
15 null 491.9273 756.9091 46 59 45.69565 58.93841 2390.954 3806.396
16 null 139.1833 183.3333 44 60 44.32967 60.65201 451.2355 140.5126
17 null 74.45902 171.2787 45 64 44.57401 64.20217 38.02454 28.8297
18 null 357.8571 261.2679 45 65 45.22064 65.16014 1643.867 649.5545
20 null 81.74576 210.5254 44 63 44.72632 63.65965 77.75586 257.0291
21 null 75.32759 1131.81 45.5 64 45.41135 64.2766 28.15156 5690.503

Total number of rows: 22153

Table truncated, full table size 1658 Kbytes.




Supplementary data files not provided

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