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Sample GSM78963 Query DataSets for GSM78963
Status Public on Oct 25, 2005
Title Radium Human 22k v2.0, NOWAC88
Sample type RNA
 
Channel 1
Source name Stratagen reference
Organism Homo sapiens
Characteristics Stratagen reference
Extracted molecule total RNA
Label Cy3
Label protocol Agilent Low RNA Input Fluorescent Linear Amplification Kit (Product Number 5184-3523).300 ng of total RNA were amplified and labeled
 
Channel 2
Source name NOWAC88
Organism Homo sapiens
Characteristics no HRT use 10.6 pmol/ug cRNA
Extracted molecule total RNA
Label Cy5
Label protocol Agilent Low RNA Input Fluorescent Linear Amplification Kit (Product Number 5184-3523).300 ng of total RNA were amplified and labeled
 
 
Hybridization protocol use of stabilization and drying solution, Agilent, Palo Alto, CA
Description Whole blood samples collectedin PAXgene tubes
Data processing Agilent Feature Extraction software version A.7.5.1 (default settings)
 
Submission date Oct 20, 2005
Last update date Oct 21, 2005
Contact name Vanessa Dumeaux
E-mail(s) vanessad@rr-research.no
Organization name "The Norwegian Women and Cancer project"
Street address University of Tromsoe
City Tromsoe
ZIP/Postal code 9037
Country Norway
 
Platform ID GPL887
Series (1)
GSE3492 Whole-blood samples from women exposed to hormone replacement therapy

Data table header descriptions
ID_REF
VALUE Log (base 10) of the ratio of the processed signals of Channel 2 to Channel 1
Cy5MeanSignal Raw mean signal of feature in Cy5 channel
Cy3MeanSignal Raw mean signal of feature in Cy3 channel
Cy5BGMedianSignal Median local background signal (local to corresponding feature) for Cy5 channel
Cy3BGMedianSignal Median local background signal (local to corresponding feature) for Cy3 channel
Cy5BGMeanSignal Mean local background signal (local to corresponding feature) for Cy5 channel
Cy3BGMeanSignal Mean local background signal (local to corresponding feature) for Cy3 channel
Cy5ProcessedSignal Dye-normalized signal for Cy5 channel after surrogate algorithm. Used for computation of VALUE
Cy3ProcessedSignal Dye-normalized signal for Cy3 channel after surrogate algorithm. Used for computation of VALUE

Data table
ID_REF VALUE Cy5MeanSignal Cy3MeanSignal Cy5BGMedianSignal Cy3BGMedianSignal Cy5BGMeanSignal Cy3BGMeanSignal Cy5ProcessedSignal Cy3ProcessedSignal
1 -1.091570538 104.9074 766.5926 49 90 48.8 90.23636 356.0888 4396.72
2 null 61.84211 173.6316 49 91 48.70221 90.5625 134.6492 19.38348
3 null 81.46552 189.3448 48 92 48.36201 92.50896 240.0127 43.92154
4 -0.4642636719 680.8113 2067.434 48 91 48.65744 91.69896 5092.295 14831.23
5 null 211.7843 392.1765 48 91 48.23103 92.05517 1270.757 1546.623
6 null 66.30769 188.5962 48 92 48.62105 92.28772 136.2843 19.95204
7 -1.390906053 79.22414 619.2586 49 92 48.62457 92.21843 133.4485 3282.613
8 0.420920071 413.4407 337.3051 49 93 49.19788 92.54417 2977.558 1129.64
9 -0.01422730179 144.5385 283.4808 49 94 48.87273 94.52 690.4886 713.4833
10 null 63.28333 171.5167 49 94 48.84727 94.62545 155.2993 19.87869
11 null 101.3621 182.4655 49 94 49.24176 94.8022 1153.208 18.17864
12 -0.3104471532 69.03704 212.1296 49 94 48.63889 94.4375 60.12527 122.8865
13 null 69.14035 185.0877 49 94 48.85091 94.14909 166.0957 18.71772
14 -1.216183296 89.03774 660.2264 49 95 48.77003 95.51568 216.5971 3563.165
15 -0.1990879402 465.15 869.0833 49 96 48.85305 96.46595 3344.991 5290.331
16 0.7569433022 105.9483 202.7586 49 96 48.76241 96.71986 407.1435 71.25317
17 null 64 191.9821 48 98 48.7614 97.91228 142.1639 18.65465
18 0.7194282673 213 224.5556 48 97 48.84375 96.89236 1271.512 242.6008
20 null 68.09091 200.1455 49 98 49.48718 98.62637 56.14346 45.63733
21 -1.235381237 85.44231 609.2115 49 99 48.93431 99.44526 184.1318 3165.993

Total number of rows: 22153

Table truncated, full table size 1658 Kbytes.




Supplementary data files not provided

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