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Sample GSM794113 Query DataSets for GSM794113
Status Public on Feb 16, 2012
Title Sort-purified (CD8/CD44low) naïve transgenic CD8 T cells replicate#1
Sample type RNA
Source name mouse splenocytes
Organism Mus musculus
Characteristics cd8 t cells: TCR GAG transgenic CD8
cd8 t cell subsets: Naïve
Extracted molecule total RNA
Extraction protocol After FACS-sorting , T-cells were washed twice with cold PBS and cell pellets were frozen and stored at -80C until all samples were collected. RNA was isolated using Qiagen RNeasy Plus Mini Kit per the manufacturer’s instructions and the yield was determined on a NanoDrop ND-1000 spectrophotometer (Thermo Scientific, Wilmington, DE). Samples that had an appropriate yield (typically 100ng total RNA) were subsequently analyzed for RNA integrity using an Agilent 2100 Bioanalyzer (Agilent Technologies, Inc., Santa Clara, CA).
Label biotin
Label protocol Illumina TotalPrep RNA Amplification Kit (Applied Biosystems)
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol BeadChips were scanned on an Illumina BeadArray Reader
Description Naïve T cells were isolated from spleens of transgenic (naïve) TCR GAG mice and FACS sorted
Data processing The data was quantile normalized using the Bioconductor package, “lumi,” and transformed to log2 scale
Submission date Sep 09, 2011
Last update date Feb 16, 2012
Contact name Andrea Schietinger
Organization name University of Washington
Department Immunology
Lab Dr. Philip D Greenberg
Street address 1959 NE Pacific Street
City Seattle
State/province WA
ZIP/Postal code 98195-7650
Country USA
Platform ID GPL6885
Series (1)
GSE32025 Gene expression profile of murine tolerant, self-antigen specific CD8 T cells

Data table header descriptions
VALUE log2 transformed, quantile normalized

Data table
ILMN_1212607 5.604862058
ILMN_1212612 5.548642122
ILMN_1212619 5.636334602
ILMN_1212628 5.41040895
ILMN_1212632 5.698774109
ILMN_1212636 10.06196516
ILMN_1212637 7.016511177
ILMN_1212645 5.809928866
ILMN_1212648 8.783631262
ILMN_1212653 7.103812329
ILMN_1212672 8.524659241
ILMN_1212682 5.789903101
ILMN_1212683 5.581953751
ILMN_1212685 5.985652221
ILMN_1212692 5.846660459
ILMN_1212693 7.443192215
ILMN_1212695 5.784154958
ILMN_1212698 5.597531174
ILMN_1212702 8.680863485
ILMN_1212703 6.8628233

Total number of rows: 25697

Table truncated, full table size 624 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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