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GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Jan 26, 2006 |
| Title |
HepG2 vs. Universal control 3 |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
HepG2
|
| Organism |
Homo sapiens |
| Characteristics |
Hepatoma cell line
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNeasy midi-prep (Qiagen, Chatsworth, CA)
|
| Label |
Cy5
|
| Label protocol |
Genisphere 3DNA Expression Array Detection Kit (Genisphere, Hatfield, PA)
|
| |
|
| Channel 2 |
| Source name |
Universal control
|
| Organism |
Homo sapiens |
| Characteristics |
Pooled total RNA from 9 cancer cells (SNU-16, Raji, CaSki, Y-79, MCF7, A431, HCT116, Ovk-4 and Jurkat)
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNeasy midi-prep (Qiagen, Chatsworth, CA)
|
| Label |
Cy3
|
| Label protocol |
Genisphere 3DNA Expression Array Detection Kit (Genisphere, Hatfield, PA)
|
| |
|
| |
| Hybridization protocol |
Genisphere 3DNA Expression Array Detection Kit (Genisphere, Hatfield, PA)
|
| Scan protocol |
Scannarray 5000 (Packard, Billerica, MA)
|
| Description |
Pro v4.0 (Axon Instruments, Whipple Road Union City, CA)
|
| Data processing |
braju.com, BRB-ArrayTools
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| |
|
| Submission date |
Oct 26, 2005 |
| Last update date |
Oct 27, 2005 |
| Contact name |
Heun-Sik Lee |
| E-mail(s) |
hslee00@kribb.re.kr
|
| Phone |
82-42-879-8121
|
| Fax |
82-42-879-8119
|
| Organization name |
Korea Reaearch Institute of Bioscience and Biotechnology
|
| Lab |
Human genomics
|
| Street address |
52 Eoeun-dong, Yuseong-gu
|
| City |
Daejeon |
| ZIP/Postal code |
305-333 |
| Country |
South Korea |
| |
|
| Platform ID |
GPL2912 |
| Series (1) |
| GSE3511 |
Hepatoma cell lines vs. Universal control 2 |
|
| Data table header descriptions |
| ID_REF |
|
| VALUE |
log2 of channel1/channel2 ratio |
| Data table |
| ID_REF |
VALUE |
| 1 |
|
| 2 |
|
| 3 |
0.23774755 |
| 4 |
0.13604597 |
| 5 |
0.3689189 |
| 6 |
|
| 7 |
0.160339456 |
| 8 |
0.202367136 |
| 9 |
0.222438725 |
| 10 |
-0.017660903 |
| 11 |
-0.249497329 |
| 12 |
|
| 13 |
|
| 14 |
|
| 15 |
-0.239892326 |
| 16 |
|
| 17 |
|
| 18 |
|
| 19 |
-0.100724846 |
| 20 |
0.038259011 |
Total number of rows: 14080
Table truncated, full table size 108 Kbytes.
| Supplementary data files not provided |
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