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Status |
Public on Jan 26, 2006 |
Title |
SNU-449 vs. Universal control 4 |
Sample type |
RNA |
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Channel 1 |
Source name |
SNU-449
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Organism |
Homo sapiens |
Characteristics |
Hepatoma cell line
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Extracted molecule |
total RNA |
Extraction protocol |
RNeasy midi-prep (Qiagen, Chatsworth, CA)
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Label |
Cy5
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Label protocol |
Genisphere 3DNA Expression Array Detection Kit (Genisphere, Hatfield, PA)
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Channel 2 |
Source name |
Universal control
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Organism |
Homo sapiens |
Characteristics |
Pooled total RNA from 9 cancer cells (SNU-16, Raji, CaSki, Y-79, MCF7, A431, HCT116, Ovk-4 and Jurkat)
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Extracted molecule |
total RNA |
Extraction protocol |
RNeasy midi-prep (Qiagen, Chatsworth, CA)
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Label |
Cy3
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Label protocol |
Genisphere 3DNA Expression Array Detection Kit (Genisphere, Hatfield, PA)
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Hybridization protocol |
Genisphere 3DNA Expression Array Detection Kit (Genisphere, Hatfield, PA)
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Scan protocol |
Scannarray 5000 (Packard, Billerica, MA)
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Description |
Pro v4.0 (Axon Instruments, Whipple Road Union City, CA)
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Data processing |
braju.com, BRB-ArrayTools
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Submission date |
Oct 26, 2005 |
Last update date |
Oct 27, 2005 |
Contact name |
Heun-Sik Lee |
E-mail(s) |
hslee00@kribb.re.kr
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Phone |
82-42-879-8121
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Fax |
82-42-879-8119
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Organization name |
Korea Reaearch Institute of Bioscience and Biotechnology
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Lab |
Human genomics
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Street address |
52 Eoeun-dong, Yuseong-gu
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City |
Daejeon |
ZIP/Postal code |
305-333 |
Country |
South Korea |
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Platform ID |
GPL2912 |
Series (1) |
GSE3511 |
Hepatoma cell lines vs. Universal control 2 |
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Data table header descriptions |
ID_REF |
|
VALUE |
log2 of channel1/channel2 ratio |
Data table |
ID_REF |
VALUE |
1 |
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2 |
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3 |
0.172369482 |
4 |
-0.823246295 |
5 |
-0.593639129 |
6 |
-0.736797634 |
7 |
-0.085338539 |
8 |
-1.318399408 |
9 |
-0.604847747 |
10 |
-0.507643514 |
11 |
0.149604813 |
12 |
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13 |
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14 |
3.503454699 |
15 |
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16 |
0.395236268 |
17 |
-0.425426254 |
18 |
-0.303837638 |
19 |
0.694440978 |
20 |
3.309147373 |
Total number of rows: 14080
Table truncated, full table size 166 Kbytes.
Supplementary data files not provided |
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