NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM801622 Query DataSets for GSM801622
Status Public on Apr 01, 2012
Title 74128_wr
Sample type RNA
 
Source name tumor
Organism Mus musculus
Characteristics background strain: C57BL/6
tissue: tumor
genotype/variation: MYCN
Treatment protocol none
Growth protocol Mice transgenic for neural crest specific expression of MYCN, mutated ALK or both were monitored until tumor was palpable and sacrificed afterwards.
Extracted molecule total RNA
Extraction protocol RNA was extracted from tumors or control tissue using the QIAGEN Rneasy mini kit.
Label biotin
Label protocol Biotin labelling was performed according the manufacturer's recommendations (Affymetrix).
 
Hybridization protocol Hybridisation to mouse 430_2 arrays was performed according to the manufacturer's recommendations (Affymetrix).
Scan protocol Scanning of chips was performed using a GeneArray scanner (Agilent).
Description tumor driven by MYCN
Data processing Signal intensities were RMA normalized using PARTEK Genomics Suite, with the .CEL files as input.
 
Submission date Sep 26, 2011
Last update date Apr 13, 2012
Contact name Alexander Schramm
E-mail(s) alexander.schramm@uk-essen.de
Organization name University Hospital Essen
Department Childrens Hospital
Lab Hematology/Oncology Lab
Street address Hufelandstr. 55
City Essen
ZIP/Postal code 45122
Country Germany
 
Platform ID GPL1261
Series (1)
GSE32386 Expression profiling of murine neuroblastoma in transgenic mice

Data table header descriptions
ID_REF
VALUE RMA-normalized signal intensity

Data table
ID_REF VALUE
1415670_at 9.32692
1415671_at 10.5619
1415672_at 11.2297
1415673_at 8.60481
1415674_a_at 10.1128
1415675_at 9.05364
1415676_a_at 11.4602
1415677_at 8.63638
1415678_at 10.4969
1415679_at 10.5186
1415680_at 9.55616
1415681_at 10.1094
1415682_at 8.72586
1415683_at 11.0853
1415684_at 8.68913
1415685_at 9.87334
1415686_at 10.1191
1415687_a_at 12.3523
1415688_at 10.7064
1415689_s_at 9.40083

Total number of rows: 45101

Table truncated, full table size 850 Kbytes.




Supplementary file Size Download File type/resource
GSM801622.CEL.gz 3.7 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap