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Sample GSM80462

Query DataSets for GSM80462

Status

Public on Dec 01, 2005

Title

OSCE-6T

Sample type

RNA

Source name

Oral Squamous Cell Epithelium Tissue

Organism

Homo sapiens

Characteristics

Oral Squamous cell Epithelium Tissue-Tumor
Patient Code:OSCC-6
Primary Site:Vestibule
Age:72
Sex:M
TNM:T2N0M0

Abbreviation:TNM,Tumor-node-metastasis

Extracted molecule

total RNA

Label

Biotin

Description

Series of 16 Tumors

Data processing

The initial analysis of generated affymetrix data was performed with their MAS 5.0 software.The chip data were scaled to 500,then exported as text files to be loaded into the Genespring 6.0 program (Silicon Genetics,Redwood City,CA).The prescaled data were normalized by using the normalization steps”per chip to 50th percentile” and “per gene to median” as recommended by the manufacturer.

Submission date

Oct 27, 2005

Last update date

Nov 09, 2005

Contact name

Gokce Toruner

E-mail(s)

torunega@umdnj.edu

Phone

973-854-3456

Organization name

UMDNJ-NJ Medical School

Department

Center for Human and Molecular Genetics

Lab

Center for Applied Genomics

Street address

225 Warren Street W410Q

City

Newark

State/province

ZIP/Postal code

07103

Country

USA

Platform ID

GPL96

Series (1)

GSE3524

Association b/w gene expression profile & tumor invasion in OSCC

Data table header descriptions
ID_REF
VALUE	Prescaled data normalized by using the normalization steps “per chip to 50th percentile” and “per gene to median” as recommended by the manufacturer.

Data table
ID_REF	VALUE
213574_s_at	0.408
213573_at	0.367
213578_at	1.244
204342_at	0.604
213572_s_at	0.254
213567_at	1.248
213564_x_at	0.69
204348_s_at	0.713
213571_s_at	0.728
213554_s_at	1.078
213612_x_at	0.846
213594_x_at	1.197
213614_x_at	0.85
204326_x_at	1.126
213593_s_at	0.613
213588_x_at	0.522
213583_x_at	0.854
204333_s_at	0.775
204334_at	0.765
204367_at	0.472

Total number of rows: 14119

Table truncated, full table size 232 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM80462.CEL.gz	3.3 Mb	(ftp)(http)	CEL