GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM80472

Query DataSets for GSM80472

Status

Public on Dec 01, 2005

Title

OSCE-15T

Sample type

RNA

Source name

Oral Squamous Cell Epithelium Tissue

Organism

Homo sapiens

Characteristics

Oral Squamous cell Epithelium Tissue-Tumor
Patient Code:OSCC-15
Primary Site:Floor of Mouth
Age:51
Sex:M
TNM:T2N0M0

Abbreviation:TNM,Tumor-node-metastasis

Extracted molecule

total RNA

Label

Biotin

Description

Series of 16 Tumors

Data processing

The initial analysis of generated affymetrix data was performed with their MAS 5.0 software.The chip data were scaled to 500,then exported as text files to be loaded into the Genespring 6.0 program (Silicon Genetics,Redwood City,CA).The prescaled data were normalized by using the normalization steps”per chip to 50th percentile” and “per gene to median” as recommended by the manufacturer.

Submission date

Oct 27, 2005

Last update date

Nov 09, 2005

Contact name

Gokce Toruner

E-mail(s)

torunega@umdnj.edu

Phone

973-854-3456

Organization name

UMDNJ-NJ Medical School

Department

Center for Human and Molecular Genetics

Lab

Center for Applied Genomics

Street address

225 Warren Street W410Q

City

Newark

State/province

ZIP/Postal code

07103

Country

USA

Platform ID

GPL96

Series (1)

GSE3524

Association b/w gene expression profile & tumor invasion in OSCC

Data table header descriptions
ID_REF
VALUE	Prescaled data normalized by using the normalization steps “per chip to 50th percentile” and “per gene to median” as recommended by the manufacturer.

Data table
ID_REF	VALUE
213574_s_at	1.077
213573_at	1.062
213578_at	0.721
204342_at	1.057
213572_s_at	1.003
213567_at	0.457
213564_x_at	0.901
204348_s_at	1.168
213571_s_at	0.62
213554_s_at	0.429
213612_x_at	0.763
213594_x_at	1.182
213614_x_at	0.825
204326_x_at	1.562
213593_s_at	0.643
213588_x_at	0.79
213583_x_at	0.739
204333_s_at	1.47
204334_at	0.565
204367_at	0.548

Total number of rows: 14119

Table truncated, full table size 232 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM80472.CEL.gz	3.4 Mb	(ftp)(http)	CEL