NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM807668 Query DataSets for GSM807668
Status Public on Nov 29, 2012
Title P_H16_I9_a1466_F
Sample type RNA
 
Source name Kidney
Organism Mus musculus
Characteristics genotype (n: Control; P: Mutant): P
age induced (days): 9
age harvested (days): 16
gender (m: Male; F: Female; U: Unknown): F
litter: 2
batch: 1
Extracted molecule total RNA
Extraction protocol RNA was isolated using Trizol (Invitrogen), followed by RNeasy plus kit (Qiagen)
Label biotin
Label protocol cRNA was generated and labeled by incorporating biotin-16-UTP.
 
Hybridization protocol 0.75 ugs of biotin-labeled cRNA was hybridized according to standard Illumina protocol.
Scan protocol Standard Illumina protocol.
Description Array name: X4160651012_E
Title format: Genotype_AgeHarvested_AgeInduced_AnimalNumber_Gender
Label of raw data matrix: LM4
Data processing The data were normalized using VST transformation with lummi in R.
 
Submission date Oct 04, 2011
Last update date Nov 29, 2012
Contact name Luis Fernando Menezes
E-mail(s) luis.menezes@nih.gov
Organization name National Institutes of Health
Department NIDDK
Street address Room 8D12A, Building 10, 10 Center Dr
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL8540
Series (1)
GSE32586 Transcriptomic and metabolomic analysis of autosomal dominant polycystic kidney disease identifies HNF4α as a disease modifier

Data table header descriptions
ID_REF
VALUE VST transformed signal

Data table
ID_REF VALUE
scl29535.9_66-S 7.74933889490336
scl066588.1_330-S 9.19851606733244
scl057265.1_17-S 10.0412800906539
scl41871.7.1_160-S 9.2669093161694
scl50807.7.1_59-S 9.02600887184993
scl068082.4_12-S 7.732190007076
scl18252.2_52-S 8.98183789458431
scl41904.3_0-S 7.9676567715582
scl40076.17_440-S 10.4205306458437
scl43183.10.1_88-S 7.70084779344269
scl0004146.1_45-S 7.84520611480995
scl26452.19.1_36-S 9.11538283977333
scl51713.6.3_46-S 8.68884680671651
scl52829.1_29-S 9.50235321992095
scl0068080.2_0-S 7.73342841904468
GI_85701695-S 7.83226062539884
scl40213.8_306-S 8.10435222376548
scl070889.6_285-S 8.15049755011825
scl070911.1_5-S 9.98657695543775
scl0102920.22_45-S 8.52470904881673

Total number of rows: 24611

Table truncated, full table size 841 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap