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Sample GSM807726 Query DataSets for GSM807726
Status Public on Nov 29, 2012
Title P_H12_I7_P_P12_M_29-101_M
Sample type RNA
 
Source name Kidney
Organism Mus musculus
Characteristics genotype (n: Control; P: Mutant): P
age induced (days): 7
age harvested (days): 12
gender (m: Male; F: Female; U: Unknown): M
litter: 29
batch: 9
Extracted molecule total RNA
Extraction protocol RNA was isolated using Trizol (Invitrogen), followed by RNeasy plus kit (Qiagen)
Label biotin
Label protocol cRNA was generated and labeled by incorporating biotin-16-UTP.
 
Hybridization protocol 0.75 ugs of biotin-labeled cRNA was hybridized according to standard Illumina protocol.
Scan protocol Standard Illumina protocol.
Description Array name: X29.101_LM8.025
Title format: Genotype_AgeHarvested_AgeInduced_AnimalNumber_Gender
Label of raw data matrix: LM8
Data processing The data were normalized using VST transformation with lummi in R.
 
Submission date Oct 04, 2011
Last update date Nov 29, 2012
Contact name Luis Fernando Menezes
E-mail(s) luis.menezes@nih.gov
Organization name National Institutes of Health
Department NIDDK
Street address Room 8D12A, Building 10, 10 Center Dr
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL6885
Series (1)
GSE32586 Transcriptomic and metabolomic analysis of autosomal dominant polycystic kidney disease identifies HNF4α as a disease modifier

Data table header descriptions
ID_REF
VALUE VST transformed signal

Data table
ID_REF VALUE
ILMN_1248788 7.54921848
ILMN_2707227 10.89029421
ILMN_2896528 10.88062267
ILMN_2721178 8.945134131
ILMN_1227723 7.749122516
ILMN_3033922 9.78321104
ILMN_3092673 11.64599832
ILMN_2730714 12.38374718
ILMN_3162224 9.025006716
ILMN_2816356 5.656518262
ILMN_2808939 8.498343057
ILMN_2634564 7.974421324
ILMN_1216623 8.242089848
ILMN_1215157 8.257961996
ILMN_1228777 5.185830087
ILMN_2737647 5.02915501
ILMN_1216425 11.28873607
ILMN_2734484 8.793275376
ILMN_2652961 4.765477779
ILMN_2952292 6.320894501

Total number of rows: 25697

Table truncated, full table size 624 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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