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Sample GSM807733 Query DataSets for GSM807733
Status Public on Nov 29, 2012
Title P_H12_I7_N_P12_M_41-02_M
Sample type RNA
 
Source name Kidney
Organism Mus musculus
Characteristics genotype (n: Control; P: Mutant): P
age induced (days): 7
age harvested (days): 12
gender (m: Male; F: Female; U: Unknown): M
litter: 41
batch: 9
Extracted molecule total RNA
Extraction protocol RNA was isolated using Trizol (Invitrogen), followed by RNeasy plus kit (Qiagen)
Label biotin
Label protocol cRNA was generated and labeled by incorporating biotin-16-UTP.
 
Hybridization protocol 0.75 ugs of biotin-labeled cRNA was hybridized according to standard Illumina protocol.
Scan protocol Standard Illumina protocol.
Description Array name: X41.02_LM8.032
Title format: Genotype_AgeHarvested_AgeInduced_AnimalNumber_Gender
Label of raw data matrix: LM8
Data processing The data were normalized using VST transformation with lummi in R.
 
Submission date Oct 04, 2011
Last update date Nov 29, 2012
Contact name Luis Fernando Menezes
E-mail(s) luis.menezes@nih.gov
Organization name National Institutes of Health
Department NIDDK
Street address Room 8D12A, Building 10, 10 Center Dr
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL6885
Series (1)
GSE32586 Transcriptomic and metabolomic analysis of autosomal dominant polycystic kidney disease identifies HNF4α as a disease modifier

Data table header descriptions
ID_REF
VALUE VST transformed signal

Data table
ID_REF VALUE
ILMN_1248788 7.155314053
ILMN_2707227 10.69911541
ILMN_2896528 10.81499881
ILMN_2721178 8.902098276
ILMN_1227723 7.669149674
ILMN_3033922 9.552231695
ILMN_3092673 11.54248283
ILMN_2730714 12.2062951
ILMN_3162224 8.810199834
ILMN_2816356 4.499635748
ILMN_2808939 8.443296392
ILMN_2634564 7.604937615
ILMN_1216623 8.037185576
ILMN_1215157 8.121954548
ILMN_1228777 4.119216273
ILMN_2737647 2.900736887
ILMN_1216425 11.15420288
ILMN_2734484 8.371530062
ILMN_2652961 2.789340717
ILMN_2952292 5.492201275

Total number of rows: 25697

Table truncated, full table size 624 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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