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Status |
Public on Jan 31, 2006 |
Title |
HepG2 vs. Universal control 5 |
Sample type |
RNA |
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Channel 1 |
Source name |
HepG2
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Organism |
Homo sapiens |
Characteristics |
Hepatoma cell line
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Extracted molecule |
total RNA |
Extraction protocol |
RNeasy midi-prep (Qiagen, Chatsworth, CA)
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Label |
Cy5
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Label protocol |
Genisphere 3DNA Expression Array Detection Kit (Genisphere, Hatfield, PA)
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Channel 2 |
Source name |
Universal control
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Organism |
Homo sapiens |
Characteristics |
Pooled total RNA from 9 cancer cells (SNU-16, Raji, CaSki, Y-79, MCF7, A431, HCT116, Ovk-4 and Jurkat)
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Extracted molecule |
total RNA |
Extraction protocol |
RNeasy midi-prep (Qiagen, Chatsworth, CA)
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Label |
Cy3
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Label protocol |
Genisphere 3DNA Expression Array Detection Kit (Genisphere, Hatfield, PA)
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Hybridization protocol |
Genisphere 3DNA Expression Array Detection Kit (Genisphere, Hatfield, PA)
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Scan protocol |
Scannarray 5000 (Packard, Billerica, MA)
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Description |
Pro v4.0 (Axon Instruments, Whipple Road Union City, CA)
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Data processing |
braju.com, BRB-ArrayToo
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Submission date |
Oct 31, 2005 |
Last update date |
Nov 01, 2005 |
Contact name |
Heun-Sik Lee |
E-mail(s) |
hslee00@kribb.re.kr
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Phone |
82-42-879-8121
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Fax |
82-42-879-8119
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Organization name |
Korea Reaearch Institute of Bioscience and Biotechnology
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Lab |
Human genomics
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Street address |
52 Eoeun-dong, Yuseong-gu
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City |
Daejeon |
ZIP/Postal code |
305-333 |
Country |
South Korea |
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Platform ID |
GPL2913 |
Series (1) |
GSE3536 |
Hepatoma cell lines vs. Universal control 3 |
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Data table header descriptions |
ID_REF |
|
VALUE |
log2 of channel1/channel2 ratio |
Data table |
ID_REF |
VALUE |
1 |
-0.771167601 |
2 |
-0.7510488 |
3 |
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4 |
1.137876302 |
5 |
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6 |
-0.148167625 |
7 |
0.326648627 |
8 |
-0.092152614 |
9 |
0.348115721 |
10 |
-0.118840269 |
11 |
-0.0309445 |
12 |
-0.242216383 |
13 |
-0.24040345 |
14 |
0.309654642 |
15 |
-0.24861464 |
16 |
0.122891762 |
17 |
0.083282549 |
18 |
2.757834095 |
19 |
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20 |
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Total number of rows: 24288
Table truncated, full table size 424 Kbytes.
Supplementary data files not provided |
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