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Sample GSM81033 Query DataSets for GSM81033
Status Public on Jan 31, 2006
Title PLC/PRF/5 vs. Universal control 6
Sample type RNA
 
Channel 1
Source name PLC/PRF/5
Organism Homo sapiens
Characteristics Hepatoma cell line
Extracted molecule total RNA
Extraction protocol RNeasy midi-prep (Qiagen, Chatsworth, CA)
Label Cy5
Label protocol Genisphere 3DNA Expression Array Detection Kit (Genisphere, Hatfield, PA)
 
Channel 2
Source name Universal control
Organism Homo sapiens
Characteristics Pooled total RNA from 9 cancer cells (SNU-16, Raji, CaSki, Y-79, MCF7, A431, HCT116, Ovk-4 and Jurkat)
Extracted molecule total RNA
Extraction protocol RNeasy midi-prep (Qiagen, Chatsworth, CA)
Label Cy3
Label protocol Genisphere 3DNA Expression Array Detection Kit (Genisphere, Hatfield, PA)
 
 
Hybridization protocol Genisphere 3DNA Expression Array Detection Kit (Genisphere, Hatfield, PA)
Scan protocol Scannarray 5000 (Packard, Billerica, MA)
Description Pro v4.0 (Axon Instruments, Whipple Road Union City, CA)
Data processing braju.com, BRB-ArrayToo
 
Submission date Oct 31, 2005
Last update date Nov 01, 2005
Contact name Heun-Sik Lee
E-mail(s) hslee00@kribb.re.kr
Phone 82-42-879-8121
Fax 82-42-879-8119
Organization name Korea Reaearch Institute of Bioscience and Biotechnology
Lab Human genomics
Street address 52 Eoeun-dong, Yuseong-gu
City Daejeon
ZIP/Postal code 305-333
Country South Korea
 
Platform ID GPL2913
Series (1)
GSE3536 Hepatoma cell lines vs. Universal control 3

Data table header descriptions
ID_REF
VALUE log2 of channel1/channel2 ratio

Data table
ID_REF VALUE
1 0.177489292
2 0.045187565
3 3.926066566
4
5
6 -1.45797709
7 0.871912107
8 0.725884762
9 0.631059169
10 0.453024753
11 0.531154007
12 0.007167126
13 0.860343401
14 -0.831001756
15 -0.304378647
16 -0.784527862
17 -0.043409563
18 8.698606794
19
20 0.459798673

Total number of rows: 24288

Table truncated, full table size 424 Kbytes.




Supplementary data files not provided

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