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Sample GSM81039 Query DataSets for GSM81039
Status Public on Jan 31, 2006
Title SNU-182 vs. Universal control 8
Sample type RNA
 
Channel 1
Source name SNU-182
Organism Homo sapiens
Characteristics Hepatoma cell line
Extracted molecule total RNA
Extraction protocol RNeasy midi-prep (Qiagen, Chatsworth, CA)
Label Cy5
Label protocol Genisphere 3DNA Expression Array Detection Kit (Genisphere, Hatfield, PA)
 
Channel 2
Source name Universal control
Organism Homo sapiens
Characteristics Pooled total RNA from 9 cancer cells (SNU-16, Raji, CaSki, Y-79, MCF7, A431, HCT116, Ovk-4 and Jurkat)
Extracted molecule total RNA
Extraction protocol RNeasy midi-prep (Qiagen, Chatsworth, CA)
Label Cy3
Label protocol Genisphere 3DNA Expression Array Detection Kit (Genisphere, Hatfield, PA)
 
 
Hybridization protocol Genisphere 3DNA Expression Array Detection Kit (Genisphere, Hatfield, PA)
Scan protocol Scannarray 5000 (Packard, Billerica, MA)
Description Pro v4.0 (Axon Instruments, Whipple Road Union City, CA)
Data processing braju.com, BRB-ArrayToo
 
Submission date Oct 31, 2005
Last update date Nov 01, 2005
Contact name Heun-Sik Lee
E-mail(s) hslee00@kribb.re.kr
Phone 82-42-879-8121
Fax 82-42-879-8119
Organization name Korea Reaearch Institute of Bioscience and Biotechnology
Lab Human genomics
Street address 52 Eoeun-dong, Yuseong-gu
City Daejeon
ZIP/Postal code 305-333
Country South Korea
 
Platform ID GPL2913
Series (1)
GSE3536 Hepatoma cell lines vs. Universal control 3

Data table header descriptions
ID_REF
VALUE log2 of channel1/channel2 ratio

Data table
ID_REF VALUE
1 0.092679876
2 -0.360969888
3 1.233523881
4
5 1.324012991
6
7 0.925819191
8 0.856111883
9 0.351928272
10 -0.055659878
11 0.00698356
12 0.264604172
13 0.430768225
14 -0.204881539
15 0.174062375
16 -0.266813383
17 0.192076823
18 0.034839779
19 3.397154707
20 3.392300264

Total number of rows: 24288

Table truncated, full table size 423 Kbytes.




Supplementary data files not provided

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