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Sample GSM811053 Query DataSets for GSM811053
Status Public on Oct 08, 2011
Title human PDAC 15 (miRNA)
Sample type RNA
 
Source name human pancreatic tumor
Organism Homo sapiens
Characteristics tissue: pancreas
disease status: pancreatic cancer
ajcc stage: 2A
grade: 3
tumor content: 50
Extracted molecule total RNA
Extraction protocol miRNA was isolated by miRNeasy mini kit according to manufacturer’s instructions
Label Hy3
Label protocol As manufacturer recommended standard protocols
 
Hybridization protocol As manufacturer recommended standard protocols
Scan protocol GenePix Personal 4100A Scanner was used for scanning.
Description miRNA expression of human PDAC
Data processing Data was normalized by variance stabilization normalization using vsn package (R/Bioconductor) which returned the data in log2 scale. For a probe with multiple spots, the mean was used for representing the probe signal.
 
Submission date Oct 06, 2011
Last update date Oct 08, 2011
Contact name Linh My Tran
E-mail(s) linhtran@ucla.edu
Organization name University of Los Angeles
Department Medicine - Pulmonary & Critical Care
Lab Dubinett Lab
Street address Box 951690, 37-131 CHS
City Los Angeles
State/province California
ZIP/Postal code 90095-1690
Country USA
 
Platform ID GPL7723
Series (2)
GSE32678 Integrative Survival-Based Molecular Profiling of Human Pancreatic Cancer [miRNA]
GSE32688 Integrative Survival-Based Molecular Profiling of Human Pancreatic Cancer

Data table header descriptions
ID_REF
VALUE log2 signal

Data table
ID_REF VALUE
-1 5.922567963
1100 2.64105947
3320 15.26902403
3980 9.681373011
4040 4.530647213
4390 3.348385082
4610 13.00567477
4700 8.254282866
5250 2.621482302
5560 11.90059451
5730 7.023223613
5740 15.85591292
6880 5.396415416
9578 12.38035972
9938 13.14931128
10138 11.89758738
10306 12.41236872
10482 2.44631794
10618 6.47366024
10899 13.52280557

Total number of rows: 1986

Table truncated, full table size 34 Kbytes.




Supplementary file Size Download File type/resource
GSM811053_22T_14091397_2009-11-17.gpr.gz 383.0 Kb (ftp)(http) GPR
Processed data included within Sample table

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