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Sample GSM811064 Query DataSets for GSM811064
Status Public on Oct 08, 2011
Title non-malignant pancreas sample 1 (miRNA)
Sample type RNA
 
Source name non-malignant pancreas
Organism Homo sapiens
Characteristics tissue: pancreas
disease status: non-malignant pancreas
ajcc stage: NA
grade: NA
tumor content: NA
Extracted molecule total RNA
Extraction protocol miRNA was isolated by miRNeasy mini kit according to manufacturer’s instructions
Label Hy3
Label protocol As manufacturer recommended standard protocols
 
Hybridization protocol As manufacturer recommended standard protocols
Scan protocol GenePix Personal 4100A Scanner was used for scanning.
Description miRNA expression of human non-malignant pancreas
Data processing Data was normalized by variance stabilization normalization using vsn package (R/Bioconductor) which returned the data in log2 scale. For a probe with multiple spots, the mean was used for representing the probe signal.
 
Submission date Oct 06, 2011
Last update date Oct 08, 2011
Contact name Linh My Tran
E-mail(s) linhtran@ucla.edu
Organization name University of Los Angeles
Department Medicine - Pulmonary & Critical Care
Lab Dubinett Lab
Street address Box 951690, 37-131 CHS
City Los Angeles
State/province California
ZIP/Postal code 90095-1690
Country USA
 
Platform ID GPL7723
Series (2)
GSE32678 Integrative Survival-Based Molecular Profiling of Human Pancreatic Cancer [miRNA]
GSE32688 Integrative Survival-Based Molecular Profiling of Human Pancreatic Cancer

Data table header descriptions
ID_REF
VALUE log2 signal

Data table
ID_REF VALUE
-1 6.625853377
1100 3.625375657
3320 13.80548298
3980 6.746924503
4040 4.152975182
4390 2.780534381
4610 13.54656245
4700 9.334894526
5250 2.846462304
5560 13.96491062
5730 8.174062603
5740 12.90238275
6880 5.131364804
9578 9.355744208
9938 11.79276435
10138 11.2387506
10306 10.27436278
10482 2.361490842
10618 8.03829628
10899 13.88568787

Total number of rows: 1986

Table truncated, full table size 34 Kbytes.




Supplementary file Size Download File type/resource
GSM811064_22403A_14091369_2009-11-24.gpr.gz 399.3 Kb (ftp)(http) GPR
Processed data included within Sample table

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