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Sample GSM82284 Query DataSets for GSM82284
Status Public on Apr 30, 2007
Title 783_p_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Nov 07, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical　array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal　intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 14337.3105 184.7899 G 152.5247 14415.3105 6464 14922.9678 176 14.96964169 94.51131634 78.275 78 11.0075 124 184.7899
1002 1 922.5922 11.8911 G 11.105 997.5922 1049 515.7559 105 11.56244564 89.83277358 75.5465 75 9.8885 178 11.8911
1003 1 -3.4082 -0.0439 L 0.7746 81.5918 82 12.779 49 7.898653984 105.3347895 82.4958 85 13.5565 123 -0.0439
1004 1 7.0882 0.0914 L 0.8999 88.0882 85 14.4942 34 6.579524517 97.88453075 81.1667 81 11.2564 186 0.0914
1005 1 6.6452 0.0856 L 0.9194 81.6452 78 12.3694 31 6.282549381 88.80010497 75.5659 75 9.2001 188 0.0856
1006 1 19.9808 0.2575 G 1.0683 93.9808 95 12.5797 52 8.136857986 87.97363451 73.9438 74 9.3158 184 0.2575
1007 1 16.8421 0.2171 L 0.9872 92.8421 93 11.0418 38 6.955796242 94.05018032 76.3681 76 12.0335 188 0.2171
1008 1 14427.3184 185.95 G 147.6663 14506.3184 5899 15221.2246 178 15.05445576 98.23716931 80.5917 79 12.8248 124 185.95
1009 1 345.6489 4.455 G 4.5153 423.6489 463 174.3065 94 10.94004154 93.82551143 78.2527 78 10.5503 188 4.455
1010 1 813.4592 10.4845 G 9.7865 889.4592 997 483.4203 98 11.17038345 90.88609234 76.7208 76 9.9241 160 10.4845
1011 1 90.6914 1.1689 G 1.8125 167.6914 171 31.2831 81 10.15541267 92.51909747 76.1156 77 10.3461 153 1.1689
1012 1 51 0.6573 G 1.4184 125 127 20.1215 71 9.507891655 88.12463526 73.7747 74 9.4164 188 0.6573
1013 1 42.209 0.544 I 1.3361 116.209 116 17.5478 67 9.236181259 86.97856897 74.6538 74 8.6524 188 0.544
1014 1 5.5333 0.0713 L 0.8964 79.5333 80 10.2526 30 6.18038702 88.72360971 74.6111 74 9.8157 168 0.0713
1015 1 14696.4629 189.4189 G 154.276 14775.4629 5479 15738.0703 218 16.66031837 95.77292812 79.3553 79 11.182 236 189.4189
1016 1 139.7857 1.8017 G 2.3454 218.7857 225 45.9277 100 11.28379154 93.28306048 78.1099 79 9.522 188 1.8017
1017 1 17.1471 0.221 G 1.0051 93.1471 94 11.9278 68 9.304853439 92.67387738 77.4902 76 11.1159 106 0.221
1018 1 20.339 0.2621 G 1.0298 98.339 86 51.3699 59 8.667244911 95.49751048 76.74 78 11.665 104 0.2621
1019 1 7.9811 0.1029 L 0.9051 82.9811 82 11.7738 53 8.214724541 91.68505058 75.9615 75 11.1234 108 0.1029
1020 1 22.9375 0.2956 G 1.0214 116.9375 120 20.9209 48 7.817640305 114.4906379 92.8274 94 13.6604 174 0.2956

Total number of rows: 54359

Table truncated, full table size 5836 Kbytes.




Supplementary file Size Download File type/resource
GSM82284.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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